1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...tgggggcagtctttcccccgcaagtcgagtttttttaccttggaaatatattttacttctacaggtttgattatgagccaagttcttttgttattcacagGGTGTCCTCAATAATACCAAATAGAGATGACATGGTTGCTACTTTACTTCAACAAACATCACTTGGACTGCCTCCTCAATGGATACGACCGTCTCCACCA
species | Zea mays |
transcript | GRMZM2G133757_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AGTGTTATTCCTGACCCATATGTTTTTCAAAGCTTCGGTAGTTCATCGGA GGTGTCCTCAATAATACCAAATAGAGATGACATGGTTGCTACTTTACTTCAEST: gi|91051391|gb|EB161809.1|EB161809
genomic: AGTGTTATTCCTGACCCATATGTTTTTCAAAGCTTCGGTAGTTCATCGGAgtatgtatac ... ttattcacagGGTGTCCTCAATAATACCAAATAGAGATGACATGGTTGCTACTTTACTTCA
EST: AGTGTTATTCCTGACCCATATGTTTTTCAAAGCTTCGGTAGTTCATCGGA GGTGTCCTCAATAATACCAAATAGAGATGACATGGTTGCTACTTTACTTCAEST: gi|76289049|gb|DV028617.1|DV028617
genomic: AGTGTTATTCCTGACCCATATGTTTTTCAAAGCTTCGGTAGTTCATCGGAgtatgtatac ... ttattcacagGGTGTCCTCAATAATACCAAATAGAGATGACATGGTTGCTACTTTACTTCA
EST: AGTGTTATTCCTGACCCATATGTTTTTCAAAGCTTCGGTAGTTCATCGGA GGTGTCCTCAATAATACCAAATAGAGATGACATGGTTGCTACTTTACTTCAEST: gi|78110369|gb|DV528781.1|DV528781
genomic: AGTGTTATTCCTGACCCATATGTTTTTCAAAGCTTCGGTAGTTCATCGGAgtatgtatac ... ttattcacagGGTGTCCTCAATAATACCAAATAGAGATGACATGGTTGCTACTTTACTTCA
EST: AGTGTTATTCCTGACCCATATGTTTTTCAAAGCTTCGGTAGTTCATCGGA GGTGTCCTCAATAATACCAAATAGAGATGACATGGTTGCTACTTTACTTCAEST: gi|76285618|gb|DV025186.1|DV025186
genomic: AGTGTTATTCCTGACCCATATGTTTTTCAAAGCTTCGGTAGTTCATCGGAgtatgtatac ... ttattcacagGGTGTCCTCAATAATACCAAATAGAGATGACATGGTTGCTACTTTACTTCA
EST: AGTGTTATTCCTGACCCATATGTTTTTCAAAGCTTCGGTAGTTCATCGGA GGTGTCCTCAATAATACCAAATAGAGATGACATGGTTGCTACTTTACTTCA
genomic: AGTGTTATTCCTGACCCATATGTTTTTCAAAGCTTCGGTAGTTCATCGGAgtatgtatac ... ttattcacagGGTGTCCTCAATAATACCAAATAGAGATGACATGGTTGCTACTTTACTTCA
atatattttacttctacaggtttgattatgagccaagttcttttgttattcacagGGTGTCCTCAATAATACCAAATAGAGATGACATGGTTGCTACTTTACTTCAACAAACATCACTTGGACTGCCTCCTCAATGGATACGACCGTCTCCACCA
gtttgat putative branch site (score: 5)
ttcttttgttattc putative PPT
ttttgttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgggggcagtctttcccccgcaagtcgagtttttttaccttggaaatatattttacttctacaggtttgattatgagccaagttcttttgttattcacagGGTGTCCTCAATAATACCAAATAGAGATGACATGGTTGCTACTTTACTTCAACAAACATCACTTGGACTGCCTCCTCAATGGATACGACCGTCTCCACCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC