1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtgtgccctgatctaccagcgttatgatttgagtattctgttgcttaattgctgtagaggacttcagattgtttgcatgttatggcatatacctgcatgctaacagatgctttcacctcgccagCTTATGGAGGACTATTCGGTCTATGTCAGCGAAGAAGAGGAAGAGGAGGAAGCTGACGACCCTTGTGATGCTGAAACTGATGAAGATCTATCCGATGAAG
species | Zea mays |
transcript | GRMZM2G123544_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AGACGTCGGATTCCACTTCGAAGGAG CTTATGGAGGACTATTCGGTCTATGTCAGCGAAGAAGAGGAAGAGGAGGAAEST: gi|30706228|gb|CD059068.1|CD059068
genomic: AGACGTCGGATTCCACTTCGAAGGAGgtgtgccctg ... acctcgccagCTTATGGAGGACTATTCGGTCTATGTCAGCGAAGAAGAGGAAGAGGAGGAA
EST: ACTCGTCGTGCTGCAGTTCGCCGAAGACGTCGGATTCCACTTCGAAGGAG CTTATGGAGGACTATTCGGTCTATGTCAGCGAAGAAGAGGAAGAGGAGGAAEST: gi|31352160|gb|CD436517.1|CD436517
genomic: ACTCGTCGTGCTGCAGTTCGCCGAAGACGTCGGATTCCACTTCGAAGGAGgtgtgccctg ... acctcgccagCTTATGGAGGACTATTCGGTCTATGTCAGCGAAGAAGAGGAAGAGGAGGAA
EST: ACTCGTCGTGCTGCAGTTCGCCGAAGACGTCGGATTCCACTTCGAAGGAG CTTATGGAGGACTATTCGGTCTATGTCAGCGAAGAAGAGGAAGAGGAGGAAEST: gi|31361627|gb|CD445984.1|CD445984
genomic: ACTCGTCGTGCTGCAGTTCGCCGAAGACGTCGGATTCCACTTCGAAGGAGgtgtgccctg ... acctcgccagCTTATGGAGGACTATTCGGTCTATGTCAGCGAAGAAGAGGAAGAGGAGGAA
EST: ACTCGTCGTGCTGCAGTTCGCCGAAGACGTCGGATTCCACTTCGAAGGAG CTTATGGAGGACTATTCGGTCTATGTCAGCGAAGAAGAGGAAGAGGAGGAAEST: gi|160481446|gb|EY254550.1|EY254550
genomic: ACTCGTCGTGCTGCAGTTCGCCGAAGACGTCGGATTCCACTTCGAAGGAGgtgtgccctg ... acctcgccagCTTATGGAGGACTATTCGGTCTATGTCAGCGAAGAAGAGGAAGAGGAGGAA
EST: ACTCGTCGTGCTGCAGTTCGCCGAAGACGTCGGATTCCACTTCGAAGGAG CTTATGGAGGACTATTCGGTCTATGTCAGCGAAGAAGAGGAAGAGGAGGAA
genomic: ACTCGTCGTGCTGCAGTTCGCCGAAGACGTCGGATTCCACTTCGAAGGAGgtgtgccctg ... acctcgccagCTTATGGAGGACTATTCGGTCTATGTCAGCGAAGAAGAGGAAGAGGAGGAA
tgtttgcatgttatggcatatacctgcatgctaacagatgctttcacctcgccagCTTATGGAGGACTATTCGGTCTATGTCAGCGAAGAAGAGGAAGAGGAGGAAGCTGACGACCCTTGTGATGCTGAAACTGATGAAGATCTATCCGATGAAG
tgctaac putative branch site (score: 49)
ctttcacctc putative PPT
atgttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtgccctgatctaccagcgttatgatttgagtattctgttgcttaattgctgtagaggacttcagattgtttgcatgttatggcatatacctgcatgctaacagatgctttcacctcgccagCTTATGGAGGACTATTCGGTCTATGTCAGCGAAGAAGAGGAAGAGGAGGAAGCTGACGACCCTTGTGATGCTGAAACTGATGAAGATCTATCCGATGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA