1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaaatgtgccacacgctagcaatagtatccatgaaacatttttgggaatgtgcctcttcatttgttttgaactgttatctgttctgcacctgcagGCAGAGTAAGTCCTGAGAGTGTGGTTTACAGTTTTGGCACTGTCTTGCTTGATCTCCTGAGTGGAAAGCACATTCCACCAAGTCAT
species | Zea mays |
transcript | GRMZM2G121826_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GAGCTACAGTACTAATTTGGCCTTCACGCCTCCTGAGTATCTTAAGACAG GCAGAGTAAGTCCTGAGAGTGTGGTTTACAGTTTTGGCACTGTCTTGCTTGEST: gi|71302365|gb|DR787300.1|DR787300
genomic: GAGCTACAGTACTAATTTGGCCTTCACGCCTCCTGAGTATCTTAAGACAGgtaaatgtgc ... gcacctgcagGCAGAGTAAGTCCTGAGAGTGTGGTTTACAGTTTTGGCACTGTCTTGCTTG
EST: GAGCTACAGTACTAATTTGGCCTTCACGCCTCCTGAGTATCTTAAGACAG GCAGAGTAAGTCCTGAGAGTGTGGTTTACGGTTTTGGCACTGTCTTGCTTEST: gi|67034938|gb|CO463471.1|CO463471
genomic: GAGCTACAGTACTAATTTGGCCTTCACGCCTCCTGAGTATCTTAAGACAGgtaaatgtgc ... gcacctgcagGCAGAGTAAGTCCTGAGAGTGTGGTTTACAGTTTTGGCACTGTCTTGCTT
EST: GAGCTACAGTACTAATTTGGCCTTCACGCCTCCTGAGTATCTTA-GACAG GCAGAAG-AAGTCCTGAAAGCGTGGTT-ACAGTTTTGGCACTGCCTTGCTTEST: gi|149012049|gb|EE042465.2|EE042465
genomic: GAGCTACAGTACTAATTTGGCCTTCACGCCTCCTGAGTATCTTAAGACAGgtaaatgtgc ... gcacctgcagGCAGA-GTAAGTCCTGAGAGTGTGGTTTACAGTTTTGGCACTGTCTTGCTT
EST: GAGCTACAGTACTAATTTGGCCTTCCCGCCTCCTGAGTATCTTAAGACAG GCAGAGTAAGTCCTGAGAEST: gi|9952364|gb|BE638947.1|BE638947
genomic: GAGCTACAGTACTAATTTGGCCTTCACGCCTCCTGAGTATCTTAAGACAGgtaaatgtgc ... gcacctgcagGCAGAGTAAGTCCTGAGA
EST: GAGCTACAGTACTAATTTGGCCTTCACGCCTCCTGAGTATCTTAAGACAG GCAGAGTAAGTCCTGAGAEST: gi|9952536|gb|BE639119.1|BE639119
genomic: GAGCTACAGTACTAATTTGGCCTTCACGCCTCCTGAGTATCTTAAGACAGgtaaatgtgc ... gcacctgcagGCAGAGTAAGTCCTGAGA
EST: GAGCTACAGTACTAATTTGGCCTTCACGCCTCCTGAGTATCTTAAGACAG GCAGAGTAAGTCCTGAGAGTGTGGTTTACAGTTTTGGCACTGTCTTGCTTGEST: gi|148982427|gb|EE028311.2|EE028311
genomic: GAGCTACAGTACTAATTTGGCCTTCACGCCTCCTGAGTATCTTAAGACAGgtaaatgtgc ... gcacctgcagGCAGAGTAAGTCCTGAGAGTGTGGTTTACAGTTTTGGCACTGTCTTGCTTG
EST: GAGCTACAGTACTAATTTGGCCTTCACGCCTCCTGAGTATCTTAAGACAG GCAGAGTAAGTCCTGAGAGTGTGGTTTACAGTTTTGGCACTGTCTTGCTTGEST: gi|148945740|gb|EC891020.2|EC891020
genomic: GAGCTACAGTACTAATTTGGCCTTCACGCCTCCTGAGTATCTTAAGACAGgtaaatgtgc ... gcacctgcagGCAGAGTAAGTCCTGAGAGTGTGGTTTACAGTTTTGGCACTGTCTTGCTTG
EST: GAGCTACAGTACTAATTTGGCCTTCACGCCTCCTGAGTATCTTAAGACAG GCAGAGTAAGTCCTGAGAGTGTGGTTTACAGTTTTGGCACTGTCTTGCTTG
genomic: GAGCTACAGTACTAATTTGGCCTTCACGCCTCCTGAGTATCTTAAGACAGgtaaatgtgc ... gcacctgcagGCAGAGTAAGTCCTGAGAGTGTGGTTTACAGTTTTGGCACTGTCTTGCTTG
tttgggaatgtgcctcttcatttgttttgaactgttatctgttctgcacctgcagGCAGAGTAAGTCCTGAGAGTGTGGTTTACAGTTTTGGCACTGTCTTGCTTGATCTCCTGAGTGGAAAGCACATTCCACCAAGTCAT
atttgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaatgtgccacacgctagcaatagtatccatgaaacatttttgggaatgtgcctcttcatttgttttgaactgttatctgttctgcacctgcagGCAGAGTAAGTCCTGAGAGTGTGGTTTACAGTTTTGGCACTGTCTTGCTTGATCTCCTGAGTGGAAAGCACATTCCACCAAGTCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA