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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaacatgacttcctttcatctattgccactgtaaggcataaatacgtgtaaacaaatatattgcattctaaatggattgtttcattgtttgtgcagTTATGTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAAAAG

Basic information

species Zea mays
transcript GRMZM2G121262_T01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G121262_T01 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os05g46270.1 (Oryza sativa), 3'ss of exon 4
gtaaacatgacttcctttcatctattgccactgtaaggcataaatacgtgtaaacaaatatattgcattctaaatggattgtttcattgtttgtgcagTTATGTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAAAAG
||||||   | |||||  ||| | |||  | ||        ||||   |  | | ||||| | |      ||||   |||||  || |     ||||| ||||||||||| ||||||||||||||| |||||||||||||||| || |||||
gtaaacccaaattcct--catgtgttgttattg--------aaat-tatccatataaatacact------taaa---attgtgacact---catgcagATATGTTTTTGACGGCAAGCCTCCTGATCTGAAGAAACAAGAGCTCGCAAAAAG

upper sequence: GRMZM2G121262_T01 (Zea mays), 3'ss of exon 5
lower sequence: GLYMA20G22190.3 (Glycine max), 3'ss of exon 4
------gtaaacatgacttcctttcatctattgccactgtaaggcataaatacgtgtaaacaaatatattgcattctaaat----------ggattgtttcattgtt--tgtgcagTTATGTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAAAAG
       |  | ||   ||   ||  |  |      || |  |    ||      ||  |  | | | |||   | | |||          |  || ||  | || |  ||||||| |||||||||||||| ||||| || ||| |||||||||||||||| || ||| |
gtatatatctatatattttaaatttgttaaacatttct-tttgttggaacctttcgtggatgatttttttgttctgttaattttgtttgctgatttcttctaatgctggtgtgcagATATGTTTTTGATGGGAAGCCACCAGATTTGAAGAAACAAGAGCTGGCCAAACG

upper sequence: GRMZM2G121262_T01 (Zea mays), 3'ss of exon 5
lower sequence: GLYMA10G28200.2 (Glycine max), 3'ss of exon 4
------gtaaacatgacttcctttcatc---tattgccactgtaaggcataaatacgtgtaaac------aaatatattgcattctaaatggattgtttcattgtt-tgtgcagTTATGTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAAAAG
       |  | ||   ||   || ||    |||| |   |||  |       | |   | |         || || ||| || || | |   || | | ||  |  | ||||| |||||||||||||| ||||| |||||| ||||||||||||||||||| ||| |
gtatatatctatatattttaaatttattaaatatttcttttgttggaaccctctgcagatgatttgttctgaaaattttgtatgctgatttttttttctaatgctggtttgcagATATGTTTTTGATGGGAAGCCACCTGATTTGAAGAAACAAGAGCTTGCCAAACG

upper sequence: GRMZM2G121262_T01 (Zea mays), 3'ss of exon 5
lower sequence: Vv14s0060g00210.t01 (Vitis vinifera), 3'ss of exon 4
-----------gtaaacatgacttcctttcatctattg---ccactgtaaggcataaa--tacgtgtaaacaaatatattgcattctaaatggattgtttcattgtttgtg-cagTTATGTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAAAAG
               || | |||   ||  |||||||     || |   |  ||      | | | ||   |  ||| ||   | ||       || |||   | |||||  |||||||||||||||||| |||||||| ||| |||| || ||||||||||| ||| |
gtaatttgtttcattacctcactcttttctatctattcatttcatttccatacacgctctttcttctagttatttat-ttatttacttgtcattttctttgcctttttgtatcagTTATGTTTTTGATGGGAAGCCTCCAGATTTGAAAAAGCAAGAGCTTGCAAAACG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211167737|gb|FL381616.1|FL381616
EST:     GGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAATCAAGCCAGT                         TTATGTTTTTGATGGCAAGCCTCCTGATATGAAGAAAACAAGAACTTGCTA
genomic: GGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAATCAAGCCAGTgtaaacatga ... gtttgtgcagTTATGTTTTTGATGGCAAGCCTCCTGATATGAAGAAA-CAAGAGCTTGCTA
EST: gi|88749646|gb|DY533787.1|DY533787
EST:     GGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAATCAAGCCAGT                         TTATGTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAA
genomic: GGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAATCAAGCCAGTgtaaacatga ... gtttgtgcagTTATGTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAA
EST: gi|211100122|gb|FL400844.1|FL400844
EST:     GGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAATCAAGCCAGT                         TTATGTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAACTTGCTAA
genomic: GGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAATCAAGCCAGTgtaaacatga ... gtttgtgcagTTATGTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAA
EST: gi|211223590|gb|FL394143.1|FL394143
EST:     GGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAATCAAGCCAGT                         TTATGTTTTTGATGGC
genomic: GGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAATCAAGCCAGTgtaaacatga ... gtttgtgcagTTATGTTTTTGATGGC
EST: gi|211425800|gb|FL370226.1|FL370226
EST:     GGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAATCAAGCCAGT                         TTATGTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAACTTGCTAA
genomic: GGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAATCAAGCCAGTgtaaacatga ... gtttgtgcagTTATGTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAA
EST: gi|28568845|gb|CB280720.1|CB280720
EST:     GGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAATCAAGCCAGT                         TTATGTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAA
genomic: GGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAATCAAGCCAGTgtaaacatga ... gtttgtgcagTTATGTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAA
EST: gi|148983038|gb|EE028944.2|EE028944
EST:     GGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAATCAAGCCAGT                         TTATGTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAA
genomic: GGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAATCAAGCCAGTgtaaacatga ... gtttgtgcagTTATGTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAA
EST: gi|211012301|gb|FL429470.1|FL429470
EST:     GGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAATCAAGCCAGT                         TTATGTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAACTTGCTAA
genomic: GGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAATCAAGCCAGTgtaaacatga ... gtttgtgcagTTATGTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAA
EST: gi|26558947|gb|CA831182.1|CA831182
EST:     GGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAATCAAGCCAGT                         TTATGTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAACTTGCTAA
genomic: GGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAATCAAGCCAGTgtaaacatga ... gtttgtgcagTTATGTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAA
EST: gi|30087247|gb|CB885455.1|CB885455
EST:     GGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAATCAAGCCAGT                         TTATGTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAA
genomic: GGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAATCAAGCCAGTgtaaacatga ... gtttgtgcagTTATGTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAA
EST: gi|211017547|gb|FL416072.1|FL416072
EST:     GGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAATCAAGCCAGT                         TTATGTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAACTTGCTAA
genomic: GGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAATCAAGCCAGTgtaaacatga ... gtttgtgcagTTATGTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAA
EST: gi|211373800|gb|FL383593.1|FL383593
EST:     GGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAATCAAGCCAGT                         TTATGTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAACTTGCTAA
genomic: GGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAATCAAGCCAGTgtaaacatga ... gtttgtgcagTTATGTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAA
EST: gi|211381883|gb|FL378666.1|FL378666
EST:     GGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAATCAAGCCAGT                         TTATGTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAACTTGCTAA
genomic: GGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAATCAAGCCAGTgtaaacatga ... gtttgtgcagTTATGTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAA
EST: gi|211207489|gb|FL412293.1|FL412293
EST:     GGAATGTTCAACCGGACAATAAGANTACTGGAAGCGGGAATCAAGCCAGT                         TTATGTTTTTGAAGGCAAGCCTCCTGATATGAAGAAAC
genomic: GGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAATCAAGCCAGTgtaaacatga ... gtttgtgcagTTATGTTTTTGATGGCAAGCCTCCTGATATGAAGAAAC
EST: gi|50328745|gb|CO523871.1|CO523871
EST:     GGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAATCAAGCCAGT                         TTATGTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAA
genomic: GGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAATCAAGCCAGTgtaaacatga ... gtttgtgcagTTATGTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAA
EST: gi|148945123|gb|EC890320.2|EC890320
EST:     GGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAATCAAGCCAGT                         TTATGTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAA
genomic: GGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAATCAAGCCAGTgtaaacatga ... gtttgtgcagTTATGTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAA
EST: gi|211150723|gb|FL424954.1|FL424954
EST:     GGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAATCAAGCCAGT                         TTATGTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAACTTGCTAA
genomic: GGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAATCAAGCCAGTgtaaacatga ... gtttgtgcagTTATGTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAA
EST: gi|78117503|gb|DV535890.1|DV535890
EST:     GGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAATCAAGCCAGT                         TTATGTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAA
genomic: GGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAATCAAGCCAGTgtaaacatga ... gtttgtgcagTTATGTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAA
EST: gi|5566733|gb|AI881599.1|AI881599
EST:     GGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAATCAAGCCAGT                         TTATGTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAACTTGCTAA
genomic: GGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAATCAAGCCAGTgtaaacatga ... gtttgtgcagTTATGTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAA
EST: gi|148985935|gb|EE029848.2|EE029848
EST:     GGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAATCAAGCCAGT                         TTATGTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAA
genomic: GGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAATCAAGCCAGTgtaaacatga ... gtttgtgcagTTATGTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAA
EST: gi|89763728|gb|DY690807.1|DY690807
EST:     GGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAATCAAGCCAGT                         TTATGTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAA
genomic: GGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAATCAAGCCAGTgtaaacatga ... gtttgtgcagTTATGTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAA
EST: gi|22473079|gb|BU037559.1|BU037559
EST:     GGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAATCAAGCCAGT                         TTATGTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAACTTGCTAA
genomic: GGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAATCAAGCCAGTgtaaacatga ... gtttgtgcagTTATGTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAA
EST: gi|211042507|gb|FL401127.1|FL401127
EST:     GGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAATCAAGCCAGT                         TTATGTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAACTTGCTAA
genomic: GGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAATCAAGCCAGTgtaaacatga ... gtttgtgcagTTATGTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAA
EST: gi|211212604|gb|FL411845.1|FL411845
EST:     GGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAATCAAGCCAGT                         TTATGTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAACTTGCTAA
genomic: GGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAATCAAGCCAGTgtaaacatga ... gtttgtgcagTTATGTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAA
EST: gi|211025441|gb|FL424759.1|FL424759
EST:     GGAATGTTCAACCGGACAATAAGATTACTGSAAGCGGGAATCAAGCCAGT                         TTATGTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAACTTGCTAA
genomic: GGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAATCAAGCCAGTgtaaacatga ... gtttgtgcagTTATGTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAA
EST: gi|31405508|gb|CD484240.1|CD484240
EST:     GGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAATCAAGCCAGT                         TTATGTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAA
genomic: GGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAATCAAGCCAGTgtaaacatga ... gtttgtgcagTTATGTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAA
EST: gi|18661475|gb|BM501417.1|BM501417
EST:     CAACCGGACAATAAGATTACTGGAAGCGGGAATCAAGCCAGT                         TTATGTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAACTTGCTAA
genomic: CAACCGGACAATAAGATTACTGGAAGCGGGAATCAAGCCAGTgtaaacatga ... gtttgtgcagTTATGTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAA
EST: gi|211153107|gb|FL147726.1|FL147726
EST:     GGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAATCAAGCCAGT                         TTATGTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAACTTGCTAA
genomic: GGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAATCAAGCCAGTgtaaacatga ... gtttgtgcagTTATGTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAA
EST: gi|211245220|gb|FL396976.1|FL396976
EST:     GGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAATCAAGCCAGT                         TTATGTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAACTTGCTAA
genomic: GGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAATCAAGCCAGTgtaaacatga ... gtttgtgcagTTATGTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAA
EST: gi|211330557|gb|FL419745.1|FL419745
EST:     GGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAATCAAGCCAGT                         TTATGTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAACTTGCTAA
genomic: GGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAATCAAGCCAGTgtaaacatga ... gtttgtgcagTTATGTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAA
EST: gi|87156101|gb|DY400890.1|DY400890
EST:     GGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAATCAAGCCAGT                         TTATGTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAACTTGCTAA
genomic: GGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAATCAAGCCAGTgtaaacatga ... gtttgtgcagTTATGTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAA
EST: gi|211437408|gb|FL427299.1|FL427299
EST:     GGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAATCAAGCCAGT                         TTATGTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAACTTGCTAA
genomic: GGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAATCAAGCCAGTgtaaacatga ... gtttgtgcagTTATGTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAA
EST: gi|71444731|gb|DR825781.1|DR825781
EST:     GGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAATCAAGCCAGT                         TTATGTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAA
genomic: GGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAATCAAGCCAGTgtaaacatga ... gtttgtgcagTTATGTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAA
EST: gi|211159822|gb|FL401300.1|FL401300
EST:     GGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAATCAAGCCAGT                         TTATGTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAACTTGCTAA
genomic: GGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAATCAAGCCAGTgtaaacatga ... gtttgtgcagTTATGTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAA
EST: gi|211154932|gb|FL392729.1|FL392729
EST:     GGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAATCAAGCCAGT                         TTATGTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAACTTGCTAA
genomic: GGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAATCAAGCCAGTgtaaacatga ... gtttgtgcagTTATGTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAA
EST: gi|211350574|gb|FL379660.1|FL379660
EST:     GGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAATCAAGCCAGT                         TTATGTTTTTGTATGGCAAGCCTCCTGATATGAAGA
genomic: GGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAATCAAGCCAGTgtaaacatga ... gtttgtgcagTTATGTTTTTG-ATGGCAAGCCTCCTGATATGAAGA
EST: gi|211063788|gb|FL421781.1|FL421781
EST:     GGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAATCAAGCCAGT                         TTATGTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAACTTGCTAA
genomic: GGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAATCAAGCCAGTgtaaacatga ... gtttgtgcagTTATGTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAA
EST: gi|211299165|gb|FL411033.1|FL411033
EST:     GGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAATCAAGCCAGT                         TTATGTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAACTTGCTAA
genomic: GGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAATCAAGCCAGTgtaaacatga ... gtttgtgcagTTATGTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAA
EST: gi|74235361|gb|DT643275.1|DT643275
EST:     GGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAATCAAGCCAGT                         TTATGTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAA
genomic: GGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAATCAAGCCAGTgtaaacatga ... gtttgtgcagTTATGTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAA
EST: gi|211428990|gb|FL402811.1|FL402811
EST:     GGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAATCAAGCCAGT                         TTATGTTTTTGATGGCMAGCCTCCTGATATGAAGAAACMAGAACTTGCTAA
genomic: GGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAATCAAGCCAGTgtaaacatga ... gtttgtgcagTTATGTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAA
EST: gi|211017548|gb|FL416073.1|FL416073
EST:     GGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAATCAAGCCAGT                         TTATGTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAACTTGCTAA
genomic: GGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAATCAAGCCAGTgtaaacatga ... gtttgtgcagTTATGTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAA
EST: gi|211500136|gb|FL426014.1|FL426014
EST:     GGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAATCAAGCCAGT                         TTATGTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAACTTGCTAA
genomic: GGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAATCAAGCCAGTgtaaacatga ... gtttgtgcagTTATGTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAA
EST: gi|9952839|gb|BE639422.1|BE639422
EST:     GGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAATCAAGCCAGT                         TTATGTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAA
genomic: GGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAATCAAGCCAGTgtaaacatga ... gtttgtgcagTTATGTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAA
EST: gi|211501768|gb|FL386313.1|FL386313
EST:     GGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAATCAAGCCAGT                         TTATGTTTTTGATGGCAAGCCTCCTG
genomic: GGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAATCAAGCCAGTgtaaacatga ... gtttgtgcagTTATGTTTTTGATGGCAAGCCTCCTG
EST: gi|211210052|gb|FL412299.1|FL412299
EST:     GGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAATCAAGCCAGT                         TTATGTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAACTTGCTAA
genomic: GGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAATCAAGCCAGTgtaaacatga ... gtttgtgcagTTATGTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAA
EST: gi|211431955|gb|FL418480.1|FL418480
EST:     GGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAATCAAGCCAGT                         TTATGTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAACTTGCTAA
genomic: GGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAATCAAGCCAGTgtaaacatga ... gtttgtgcagTTATGTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAA
EST: gi|211212177|gb|FL397460.1|FL397460
EST:     GGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAATCAAGCCAGT                         TTATGTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAACTTGCTAA
genomic: GGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAATCAAGCCAGTgtaaacatga ... gtttgtgcagTTATGTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAA
EST: gi|211413681|gb|FL415020.1|FL415020
EST:     GGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAATCAAGCCAGT                         TTATGTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAACTTGCTAA
genomic: GGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAATCAAGCCAGTgtaaacatga ... gtttgtgcagTTATGTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAA
EST: gi|211269215|gb|FL410577.1|FL410577
EST:     GGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAATCAAGCCAGT                         TTATGTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAACTTGCTAA
genomic: GGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAATCAAGCCAGTgtaaacatga ... gtttgtgcagTTATGTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAA
EST: gi|211149118|gb|FL417449.1|FL417449
EST:     GGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAATCAAGCCAGT                         TTATGTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAACTTGCTAA
genomic: GGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAATCAAGCCAGTgtaaacatga ... gtttgtgcagTTATGTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAA
EST: gi|93014006|gb|EB639526.1|EB639526
EST:     GGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAATCAAGCCAGT                         TTATGTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAA
genomic: GGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAATCAAGCCAGTgtaaacatga ... gtttgtgcagTTATGTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAA
EST: gi|211245266|gb|FL399179.1|FL399179
EST:     GGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAATCAAGCCAGT                         TTATGTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAACTTGCTAA
genomic: GGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAATCAAGCCAGTgtaaacatga ... gtttgtgcagTTATGTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAA
EST: gi|211496668|gb|FL401564.1|FL401564
EST:     GGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAATCAAGCCAGT                         TTATGTTTTTGATGGCAAGCCTCCTGATATGAAGAAACWAGAACTTGCTAA
genomic: GGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAATCAAGCCAGTgtaaacatga ... gtttgtgcagTTATGTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAA
EST: gi|211467040|gb|FL427724.1|FL427724
EST:     GGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAATCAAGCCAGT                         TTATGTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAACTTGCTAA
genomic: GGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAATCAAGCCAGTgtaaacatga ... gtttgtgcagTTATGTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAA
EST: gi|76018920|gb|DT946090.1|DT946090
EST:     GGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAATCAAGCCAGT                         TTATGTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAA
genomic: GGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAATCAAGCCAGTgtaaacatga ... gtttgtgcagTTATGTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAA
EST: gi|32907157|gb|CF011970.1|CF011970
EST:     GGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAATCAAGCCAGT                         TTATGTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAA
genomic: GGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAATCAAGCCAGTgtaaacatga ... gtttgtgcagTTATGTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAA
EST: gi|91054792|gb|EB165210.1|EB165210
EST:     GGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAATCAAGCCAGT                         TTATGTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAA
genomic: GGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAATCAAGCCAGTgtaaacatga ... gtttgtgcagTTATGTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAA
EST: gi|211073425|gb|FL369872.1|FL369872
EST:     GGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAATCAAGCCAGT                         TTATGTTTTTGATGGCMAGCCTCCTGATATGAAGAAACAAGAACTTG
genomic: GGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAATCAAGCCAGTgtaaacatga ... gtttgtgcagTTATGTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTG
EST: gi|211518748|gb|FL408140.1|FL408140
EST:     GGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAATCAAGCCAGT                         TTATGTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAACTTGCTAA
genomic: GGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAATCAAGCCAGTgtaaacatga ... gtttgtgcagTTATGTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAA
EST: gi|211145693|gb|FL374594.1|FL374594
EST:     GGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAATCAAGCCAGT                         TTATGTNTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAACTTGCT
genomic: GGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAATCAAGCCAGTgtaaacatga ... gtttgtgcagTTATGTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCT
EST: gi|211095527|gb|FL420438.1|FL420438
EST:     GGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAATCAAGCCAGT                         TTATGTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAACTTGCTAA
genomic: GGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAATCAAGCCAGTgtaaacatga ... gtttgtgcagTTATGTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAA
EST: gi|211541786|gb|FL372764.1|FL372764
EST:     GGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAATCAAGCCAGT                         TTATGTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAACTTGCTAA
genomic: GGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAATCAAGCCAGTgtaaacatga ... gtttgtgcagTTATGTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAA
EST: gi|211017549|gb|FL416074.1|FL416074
EST:     GGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAATCAAGCCAGT                         TTATGTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAACTTGCTAA
genomic: GGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAATCAAGCCAGTgtaaacatga ... gtttgtgcagTTATGTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAA
EST: gi|211092307|gb|FL381165.1|FL381165
EST:     GGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAATCAAGCCAGT                         TTATGTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAACTTGCTAA
genomic: GGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAATCAAGCCAGTgtaaacatga ... gtttgtgcagTTATGTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAA
EST: gi|211109386|gb|FL406905.1|FL406905
EST:     GGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAATCAAGCCAGT                         TTATGTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAACTTGCTAA
genomic: GGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAATCAAGCCAGTgtaaacatga ... gtttgtgcagTTATGTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 47 (upstream exon), 49 (downstream exon)
Score: 340

TCATTTGCAAGGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAATCAAGCCAGTgtaaacatga ... gtttgtgcagTTATGTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAAAAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 63

TCATTTGCAAGGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAATCAAGCCAGTgtaaacatga ... gtttgtgcagTTATGTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAAAAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 76

TCATTTGCAAGGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAATCAAGCCAGTgtaaacatga ... gtttgtgcagTTATGTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAAAAG


Block sizes: 47 (upstream exon), 49 (downstream exon)
Score: 46

TCATTTGCAAGGAATGTTCAACCGGACAATAAGATTACTGGAAGCGGGAATCAAGCCAGTgtaaacatga ... gtttgtgcagTTATGTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAAAAG




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atacgtgtaaacaaatatattgcattctaaatggattgtttcattgtttgtgcagTTATGTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAAAAG
                        ttctaaa  putative branch site (score: 46)
     tgtaaacaaatatatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaaacatgacttcctttcatctattgccactgtaaggcataaatacgtgtaaacaaatatattgcattctaaatggattgtttcattgtttgtgcagTTATGTTTTTGATGGCAAGCCTCCTGATATGAAGAAACAAGAGCTTGCTAAAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT