1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtagcaatgacgaggtcctcttaccttttgcctagttttctttctgctccatgcatccgtaccaaaaccttgtagtgccgagctaacggttatgtttttgcagGAACAAGAATTGCTGGATCTCAATAAAGACCTAAGGAAGCAG
species | Zea mays |
transcript | GRMZM2G099522_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AATCAAATGCTACTTGATCAGCTCTTTGACCTCAAAAGCAAG GAACAAGAATTGCTGGATCTCAATAAAGACCTAAGGAAGCAGEST: gi|32857754|gb|CD997435.1|CD997435
genomic: AATCAAATGCTACTTGATCAGCTCTTTGACCTCAAAAGCAAGgtagcaatga ... gtttttgcagGAACAAGAATTGCTGGATCTCAATAAAGACCTAAGGAAGCAG
EST: AATCAAATGTTACTTGACCAGCTATTTGATCTCAAAAGCAAG GAACAAGAATTGCTGGATCTCAATAAAGACCTAAGGAAGCAGEST: gi|32846169|gb|CD985850.1|CD985850
genomic: AATCAAATGCTACTTGATCAGCTCTTTGACCTCAAAAGCAAGgtagcaatga ... gtttttgcagGAACAAGAATTGCTGGATCTCAATAAAGACCTAAGGAAGCAG
EST: AATCAAATGTTACTTGACCAGCTATTTGATCTCAAAAGCAAG GAACAAGAATTGCTGGATCTCAATAAAGACCTAAGGAAGCAGEST: gi|211157483|gb|FL345406.1|FL345406
genomic: AATCAAATGCTACTTGATCAGCTCTTTGACCTCAAAAGCAAGgtagcaatga ... gtttttgcagGAACAAGAATTGCTGGATCTCAATAAAGACCTAAGGAAGCAG
EST: AATCAAATGCTACTTGATCAGCTCTTTGACCTCAAAAGCAAG GAACAAGAATTGCTGGATCTCAATAAAGACCTAAGGAAGCAGEST: gi|31360882|gb|CD445239.1|CD445239
genomic: AATCAAATGCTACTTGATCAGCTCTTTGACCTCAAAAGCAAGgtagcaatga ... gtttttgcagGAACAAGAATTGCTGGATCTCAATAAAGACCTAAGGAAGCAG
EST: AATCAAATGCTACTTGATCAGCTCTTTGACCTCAAAAGCAAG GAACAAGAATTGCTGGATCTCAATAAAGACCTAAGGAAGCAGEST: gi|7145381|gb|AW506862.1|AW506862
genomic: AATCAAATGCTACTTGATCAGCTCTTTGACCTCAAAAGCAAGgtagcaatga ... gtttttgcagGAACAAGAATTGCTGGATCTCAATAAAGACCTAAGGAAGCAG
EST: AATCAAATGCTACTTGATCAGCTCTTTGACCTCAAAAGCAAG GAACAAGAATTGCTGGATCTCAATAAAGACCTAAGGAAGCAGEST: gi|32848261|gb|CD987942.1|CD987942
genomic: AATCAAATGCTACTTGATCAGCTCTTTGACCTCAAAAGCAAGgtagcaatga ... gtttttgcagGAACAAGAATTGCTGGATCTCAATAAAGACCTAAGGAAGCAG
EST: AATCAAATGTTACTTGACCAGCTATTTGATCTCAAAAGCAAG GAACAAGAATTGCTGGATCTCAATAAAGACCTAAGGAAGCAGEST: gi|32836291|gb|CD975969.1|CD975969
genomic: AATCAAATGCTACTTGATCAGCTCTTTGACCTCAAAAGCAAGgtagcaatga ... gtttttgcagGAACAAGAATTGCTGGATCTCAATAAAGACCTAAGGAAGCAG
EST: AATCAAATGTTACTTGACCAGCTATTTGATCTCAAAAGCAAG GAACAAGAATTGCTGGATCTCAATAAAGACCTAAGGAAGCAGEST: gi|32846341|gb|CD986022.1|CD986022
genomic: AATCAAATGCTACTTGATCAGCTCTTTGACCTCAAAAGCAAGgtagcaatga ... gtttttgcagGAACAAGAATTGCTGGATCTCAATAAAGACCTAAGGAAGCAG
EST: AATCAAATGTTACTTGACCAGCTATTTGATCTCAAAAGCAAG GAACAAGAATTGCTGGATCTCAATAAAGACCTAAGGAAGCAGEST: gi|7145380|gb|AW506861.1|AW506861
genomic: AATCAAATGCTACTTGATCAGCTCTTTGACCTCAAAAGCAAGgtagcaatga ... gtttttgcagGAACAAGAATTGCTGGATCTCAATAAAGACCTAAGGAAGCAG
EST: AATCAAATGCTACTTGATCAGCTCTTTGACCTCAAAAGCAAG GAACAAGAATTGCTGGATCTCAATAAAGACCTAAGGAAGCAGEST: gi|32848303|gb|CD987984.1|CD987984
genomic: AATCAAATGCTACTTGATCAGCTCTTTGACCTCAAAAGCAAGgtagcaatga ... gtttttgcagGAACAAGAATTGCTGGATCTCAATAAAGACCTAAGGAAGCAG
EST: AATCAAATGTTACTTGACCAGCTATTTGATCTCAAAAGCAAG GAACAAGAATTGCTGGATCTCAATAAAGACCTAAGGAAGCAGEST: gi|89761505|gb|DY689494.1|DY689494
genomic: AATCAAATGCTACTTGATCAGCTCTTTGACCTCAAAAGCAAGgtagcaatga ... gtttttgcagGAACAAGAATTGCTGGATCTCAATAAAGACCTAAGGAAGCAG
EST: AATCAAATGCTACTTGATCAGCTCTTTGACCTCAAAAGCAAG GAACAAGAATTGCTGGATCTCAATAAAGACCTAAGGAAGCAG
genomic: AATCAAATGCTACTTGATCAGCTCTTTGACCTCAAAAGCAAGgtagcaatga ... gtttttgcagGAACAAGAATTGCTGGATCTCAATAAAGACCTAAGGAAGCAG
ccatgcatccgtaccaaaaccttgtagtgccgagctaacggttatgtttttgcagGAACAAGAATTGCTGGATCTCAATAAAGACCTAAGGAAGCAG
agctaac putative branch site (score: 2)
tgttttt putative PPT
ttatgttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagcaatgacgaggtcctcttaccttttgcctagttttctttctgctccatgcatccgtaccaaaaccttgtagtgccgagctaacggttatgtttttgcagGAACAAGAATTGCTGGATCTCAATAAAGACCTAAGGAAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA