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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtatgcaggaaatcatttttagacacaatgtgatataatgcaaataacacattttttgtcctttttctgaccattatctatttaacttgtgacagTACCTCCGGAAAATAAAGCTATTTGGGTACAGAGTGTTTCTTATTTATGCG

Basic information

species Zea mays
transcript GRMZM2G095611_T01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G095611_T01 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os01g63870.1 (Oryza sativa), 3'ss of exon 3
gtgagtatgcaggaaatca--tttttagacacaatgtgatataatgcaaataacacattttttgtcctttttctgaccattatctatttaacttgtgacagTACCTCCGGAAAATAAAGCTATTTGGGTACAGAGTGTTTCTTATTTATGCG
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gtgagtatgcagtaaaccaacttgttaaatgcattgtaatattttgtgcaaataatgtcttaagctgatgatctg-------tctattt---ctgtgacagTACCTCCGAAAAGTAAAGTTATTTGGCTACCGGGTGTTTTTAATTTATGCG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71443802|gb|DR824852.1|DR824852
EST:     GTATAGAGATGGGAATTCTGCAGTTATTGATGGTGGTTATTTTTGCACTT                         TACCTCCGGAAAATAAAGCTATTTGGGTACAGAGTGTTTCTTATTTATGCG
genomic: GTATAGAGATGGGAATTCTGCAGTTATTGATGGTGGTTATTTTTGCACTTgtgagtatgc ... cttgtgacagTACCTCCGGAAAATAAAGCTATTTGGGTACAGAGTGTTTCTTATTTATGCG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caaataacacattttttgtcctttttctgaccattatctatttaacttgtgacagTACCTCCGGAAAATAAAGCTATTTGGGTACAGAGTGTTTCTTATTTATGCG
                                attatctatttaactt  TA-rich tract