1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaagccagacatgatatcgatccttgttgctcttcttctctctttttttcccaaagaaaatctcaaggaaaggaactgcttctatgtgctgttattctgtaccagGCTGCTGTTTGGATCGTCCGGATAACGGGTACAGTCATGCTGCAGTAATCCGTTTCCCATCAT
species | Zea mays |
transcript | GRMZM2G092497_T02 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TTGATCAGCCAATGCAGCGCTTCTATTGTGCAGGCAACATGTG GCTGCTGTTTGGATCGTCCGGATAACGGGTACAGTCATGCTGCAGTAATCCEST: gi|50331033|gb|CO526159.1|CO526159
genomic: TTGATCAGCCAATGCAGCGCTTCTATTGTGCAGGCAACATGTGgtaagccaga ... tctgtaccagGCTGCTGTTTGGATCGTCCGGATAACGGGTACAGTCATGCTGCAGTAATCC
EST: TGACAAGTTGATCAGCCAATGCAGCGCTTCTATTGTGCAGGCAACATGTG GCTGCTGTTTGGATCGTCCGGATAACGGGTACAGTCATGCTGCAGTAATCC
genomic: TGACAAGTTGATCAGCCAATGCAGCGCTTCTATTGTGCAGGCAACATGTGgtaagccaga ... tctgtaccagGCTGCTGTTTGGATCGTCCGGATAACGGGTACAGTCATGCTGCAGTAATCC
ccaaagaaaatctcaaggaaaggaactgcttctatgtgctgttattctgtaccagGCTGCTGTTTGGATCGTCCGGATAACGGGTACAGTCATGCTGCAGTAATCCGTTTCCCATCAT
ttattct CT-rich tract
aaaatct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagccagacatgatatcgatccttgttgctcttcttctctctttttttcccaaagaaaatctcaaggaaaggaactgcttctatgtgctgttattctgtaccagGCTGCTGTTTGGATCGTCCGGATAACGGGTACAGTCATGCTGCAGTAATCCGTTTCCCATCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG