1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...aaaggtttagtccttgtctgtagctctgtgtagtgcagtgcaagttcactactgtaacggcacaataattttggatgctaatatgcttttggatgtgcagGAGATATTGTGAAGTACCTGTTCAGGAACTATGGACAAGGAAGGAGTCCTTCACCTGGTCTCCTTGAGAG
species | Zea mays |
transcript | GRMZM2G086971_T04 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TGGTATCTCAATGTATGAAAGTG GAGATATTGTGAAGTNCCTGTTCAGGAACTATGGACAAGGAAGGAGTCCTTEST: gi|78125582|gb|DV543966.1|DV543966
genomic: TGGTATCTCAATGTATGAAAGTGgtaagttctg ... ggatgtgcagGAGATATTGTGAAGTACCTGTTCAGGAACTATGGACAAGGAAGGAGTCCTT
EST: GTTTCCACTCCTTGTTGACGCCAGTACTGGTATCTCAATGTATGAAAGTG GAGATATTGTGAAGTACCTGTTCAGGAACTATGGACAAGGAAGGAGTCCTTEST: gi|76012728|gb|DT939898.1|DT939898
genomic: GTTTCCACTCCTTGTTGACGCCAGTACTGGTATCTCAATGTATGAAAGTGgtaagttctg ... ggatgtgcagGAGATATTGTGAAGTACCTGTTCAGGAACTATGGACAAGGAAGGAGTCCTT
EST: GTTTCCACTCCTTGTTGACGCCAGTACTGGTATCTCAATGTATGAAAGTG GAGATATTGTGAAGTACCTGTTCAGGAACTATGGACAAGGAAGGAGTCCTT
genomic: GTTTCCACTCCTTGTTGACGCCAGTACTGGTATCTCAATGTATGAAAGTGgtaagttctg ... ggatgtgcagGAGATATTGTGAAGTACCTGTTCAGGAACTATGGACAAGGAAGGAGTCCTT
tcactactgtaacggcacaataattttggatgctaatatgcttttggatgtgcagGAGATATTGTGAAGTACCTGTTCAGGAACTATGGACAAGGAAGGAGTCCTTCACCTGGTCTCCTTGAGAG
tgctaat putative branch site (score: 2)
acaataatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaaggtttagtccttgtctgtagctctgtgtagtgcagtgcaagttcactactgtaacggcacaataattttggatgctaatatgcttttggatgtgcagGAGATATTGTGAAGTACCTGTTCAGGAACTATGGACAAGGAAGGAGTCCTTCACCTGGTCTCCTTGAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG