1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtacataattatggcccatgatagcattgtcagatcaaagactagacatacataattttgcatgcttctgacagctactagcatttggttaaatatggtcgattggattgaagatagaacttgttgctgatatatatctttttgtcaaattgccattcagGCTGAGGACCCCTGTGGACAATGCCCTTAGAGATGCAAAGTTGCAATTCAAAGATATTGATGAGGTTATTCTTGTTGGTGGCTCAACTAGAATACCAGCT
species | Zea mays |
transcript | GRMZM2G079668_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ACTCTTACCAGGGCTAAATTTGAAGAGCTATGCTCAGATCTCCTTGACAG GCTGAGGACCCCTGTGGACAATGCCCTTAGAGATGCAAAGTTGCAATTCAAEST: gi|87153250|gb|DY398039.1|DY398039
genomic: ACTCTTACCAGGGCTAAATTTGAAGAGCTATGCTCAGATCTCCTTGACAGgtacataatt ... tgccattcagGCTGAGGACCCCTGTGGACAATGCCCTTAGAGATGCAAAGTTGCAATTCAA
EST: ACTCTTACCAGGGCTAAATTTGAAGAGCTATGCTCAGATCTCCTTGACAG GCTGAGGACCCCTGTGGACAATGCCCTTAGAGATGCAAAGTTGCAATTCAAEST: gi|31356114|gb|CD440471.1|CD440471
genomic: ACTCTTACCAGGGCTAAATTTGAAGAGCTATGCTCAGATCTCCTTGACAGgtacataatt ... tgccattcagGCTGAGGACCCCTGTGGACAATGCCCTTAGAGATGCAAAGTTGCAATTCAA
EST: ACTCTTACCAGGGCTAAATTTGAAGAGCTATGCTCAGATCTCCTTGACAG GCTGAGGACCCCTGTGGACAATGCCCTTAGAGATGCAAAGTTGCAATTCAAEST: gi|67039401|gb|CO465656.1|CO465656
genomic: ACTCTTACCAGGGCTAAATTTGAAGAGCTATGCTCAGATCTCCTTGACAGgtacataatt ... tgccattcagGCTGAGGACCCCTGTGGACAATGCCCTTAGAGATGCAAAGTTGCAATTCAA
EST: ACTCTTACCAGGGCTAAATTTGAAGAGCTATGCTCAGATCTCCTTGACAG GCTGAGGACCCCTGTGGACAATGCCCTTAGATATGCAAAGTTGCAATTCAAEST: gi|22490415|gb|BU050338.1|BU050338
genomic: ACTCTTACCAGGGCTAAATTTGAAGAGCTATGCTCAGATCTCCTTGACAGgtacataatt ... tgccattcagGCTGAGGACCCCTGTGGACAATGCCCTTAGAGATGCAAAGTTGCAATTCAA
EST: ACTCTTACCAGGGCTAAATTTGAAGAGCTATGCTCAGATCTCCTTGACAG GCTGAGGACCCCTGTGGACAATGCCCTTAGAGATGCAAAGTTGCAATTCAAEST: gi|78080017|gb|DV508429.1|DV508429
genomic: ACTCTTACCAGGGCTAAATTTGAAGAGCTATGCTCAGATCTCCTTGACAGgtacataatt ... tgccattcagGCTGAGGACCCCTGTGGACAATGCCCTTAGAGATGCAAAGTTGCAATTCAA
EST: ACTCTTACCAGGGCTAAATTTGAAGAGCTATGCTCAGATCTCCTTGACAG GCTGAGGACCCCTGTGGACAATGCCCTTAGAGATGCAAAGTTGCAATTCAA
genomic: ACTCTTACCAGGGCTAAATTTGAAGAGCTATGCTCAGATCTCCTTGACAGgtacataatt ... tgccattcagGCTGAGGACCCCTGTGGACAATGCCCTTAGAGATGCAAAGTTGCAATTCAA
gattgaagatagaacttgttgctgatatatatctttttgtcaaattgccattcagGCTGAGGACCCCTGTGGACAATGCCCTTAGAGATGCAAAGTTGCAATTCAAAGATATTGATGAGGTTATTCTTGTTGGTGGCTCAACTAGAATACCAGCT
tgctgat putative branch site (score: 366)
atatatatctttttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacataattatggcccatgatagcattgtcagatcaaagactagacatacataattttgcatgcttctgacagctactagcatttggttaaatatggtcgattggattgaagatagaacttgttgctgatatatatctttttgtcaaattgccattcagGCTGAGGACCCCTGTGGACAATGCCCTTAGAGATGCAAAGTTGCAATTCAAAGATATTGATGAGGTTATTCTTGTTGGTGGCTCAACTAGAATACCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG