1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tcttctgtactatactactattacatgaaatttggaatgcttcgccatgttgctatccaagtgacactcttctatgcatgttttcatttgcatttggcagACTCAGGTGTTACTTGATGAACTTTGCGACTTAAAGAGAAAG
species | Zea mays |
transcript | GRMZM2G071620_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AGCTTGAGAGTCAAGTAGACAAGACCTTGAAGCAAATAAGATCAAGAAAG ACTCAGGTGTTACTTGATGAACTTTGCGACTTAAAGAGAAAGEST: gi|78104752|gb|DV523170.1|DV523170
genomic: AGCTTGAGAGTCAAGTAGACAAGACCTTGAAGCAAATAAGATCAAGAAAGgtaaactgat ... catttggcagACTCAGGTGTTACTTGATGAACTTTGCGACTTAAAGAGAAAG
EST: AGCTTGAGAGTCAAGTAGACAAGACCTTGAAGCAAATAAGATCAAGAAAG ACTCAGGTGTTACTTGATGAACTTTGCGACTTAAAGAGAAAGEST: gi|78104753|gb|DV523171.1|DV523171
genomic: AGCTTGAGAGTCAAGTAGACAAGACCTTGAAGCAAATAAGATCAAGAAAGgtaaactgat ... catttggcagACTCAGGTGTTACTTGATGAACTTTGCGACTTAAAGAGAAAG
EST: AGCTTGAGAGTCAAGTAGACAAGACCTTGAAGCAAATAAGATCAAGAAAG ACTCAGGTGTTACTTGATGAACTTTGCGACTTANAGAGAAAGEST: gi|211236050|gb|FL156597.1|FL156597
genomic: AGCTTGAGAGTCAAGTAGACAAGACCTTGAAGCAAATAAGATCAAGAAAGgtaaactgat ... catttggcagACTCAGGTGTTACTTGATGAACTTTGCGACTTAAAGAGAAAG
EST: AGCTTGAGAGTCAAGTAGACAAGACCTTGAAGCAAATAAGATCAAGAAAG ACTCAGGTGTTACTTGATGAACTTTGCGACTTAAAGAGAAAGEST: gi|30031660|gb|CB833511.1|CB833511
genomic: AGCTTGAGAGTCAAGTAGACAAGACCTTGAAGCAAATAAGATCAAGAAAGgtaaactgat ... catttggcagACTCAGGTGTTACTTGATGAACTTTGCGACTTAAAGAGAAAG
EST: AGCTTGAGAGTCAAGTAGACAAGACCTTGAAGCAAATAAGATCAAGAAAG ACTCAGGTGTTACTTGATGAACTTTGCGACTTAAAGAGAAAGEST: gi|50326015|gb|CO521141.1|CO521141
genomic: AGCTTGAGAGTCAAGTAGACAAGACCTTGAAGCAAATAAGATCAAGAAAGgtaaactgat ... catttggcagACTCAGGTGTTACTTGATGAACTTTGCGACTTAAAGAGAAAG
EST: AGCTTGAGAGTCAAGTAGACAAGACCTTGAAGCAAATAAGATCAAGAAAG ACTCAGGTGTTACTTGATGAACTTTGCGACTTAAAGAGAAAGEST: gi|71448410|gb|DR829460.1|DR829460
genomic: AGCTTGAGAGTCAAGTAGACAAGACCTTGAAGCAAATAAGATCAAGAAAGgtaaactgat ... catttggcagACTCAGGTGTTACTTGATGAACTTTGCGACTTAAAGAGAAAG
EST: AGCTTGAGAGTCAAGTAGACAAGACCTTGAAGCAAATAAGATCAAGAAAG ACTCAGGTGTTACTTGATGAACTTTGCGACTTAAAGAGAAAGEST: gi|18174972|gb|BM350360.1|BM350360
genomic: AGCTTGAGAGTCAAGTAGACAAGACCTTGAAGCAAATAAGATCAAGAAAGgtaaactgat ... catttggcagACTCAGGTGTTACTTGATGAACTTTGCGACTTAAAGAGAAAG
EST: ATAAGATCAAGAAAG ACTCAGGTGTTACTTGATGAACTTTGCGACTTAAAGAGAAAGEST: gi|71762711|gb|DR960648.1|DR960648
genomic: ATAAGATCAAGAAAGgtaaactgat ... catttggcagACTCAGGTGTTACTTGATGAACTTTGCGACTTAAAGAGAAAG
EST: AGCTTGAGAGTCAAGTAGACAAGACCTTGAAGCAAATAAGATCAAGAAAG ACTCAGGTGTTACTTGATGAACTTTGCGACTTAAAGAGAAAGEST: gi|50326014|gb|CO521140.1|CO521140
genomic: AGCTTGAGAGTCAAGTAGACAAGACCTTGAAGCAAATAAGATCAAGAAAGgtaaactgat ... catttggcagACTCAGGTGTTACTTGATGAACTTTGCGACTTAAAGAGAAAG
EST: AGCTTGAGAGTCAAGTAGACAAGACCTTGAAGCAAATAAGATCAAGAAAG ACTCAGGTGTTACTTGATGAACTTTGCGACTTAAAGAGAAAGEST: gi|32165114|gb|CD670432.1|CD670432
genomic: AGCTTGAGAGTCAAGTAGACAAGACCTTGAAGCAAATAAGATCAAGAAAGgtaaactgat ... catttggcagACTCAGGTGTTACTTGATGAACTTTGCGACTTAAAGAGAAAG
EST: AGCTTGAGAGTCAAGTAGACAAGACCTTGAAGCAAATAAGATCAAGAAAG ACTCAGGTGTTACTTGATGAACTTTGCGACTTAAAGAGAAAGEST: gi|50325855|gb|CO520981.1|CO520981
genomic: AGCTTGAGAGTCAAGTAGACAAGACCTTGAAGCAAATAAGATCAAGAAAGgtaaactgat ... catttggcagACTCAGGTGTTACTTGATGAACTTTGCGACTTAAAGAGAAAG
EST: AGCTTGAGAGTCAAGTAGACAAGACCTTGAAGCAAATAAGATCAAGAAAG ACTCAGGTGTTACTTGATGAACTTTGCGACTTAAAGAGAAAGEST: gi|76285216|gb|DV024784.1|DV024784
genomic: AGCTTGAGAGTCAAGTAGACAAGACCTTGAAGCAAATAAGATCAAGAAAGgtaaactgat ... catttggcagACTCAGGTGTTACTTGATGAACTTTGCGACTTAAAGAGAAAG
EST: AGCTTGAGAGTCAAGTAGACAAGACCTTGAAGCAAATAAGATCAAGAAAG ACTCAGGTGTTACTTGATGAACTTTGCGACTTANAGAGAAAGEST: gi|32836421|gb|CD976099.1|CD976099
genomic: AGCTTGAGAGTCAAGTAGACAAGACCTTGAAGCAAATAAGATCAAGAAAGgtaaactgat ... catttggcagACTCAGGTGTTACTTGATGAACTTTGCGACTTAAAGAGAAAG
EST: AGCTTGAGAGTCAAGTAGACAAGACCTTGAAGCAAATAAGATCAAGAAAG ACTCAGGTGTTACTTGATGAACTTTGCGACTTAAAGAGAAAG
genomic: AGCTTGAGAGTCAAGTAGACAAGACCTTGAAGCAAATAAGATCAAGAAAGgtaaactgat ... catttggcagACTCAGGTGTTACTTGATGAACTTTGCGACTTAAAGAGAAAG
catgttgctatccaagtgacactcttctatgcatgttttcatttgcatttggcagACTCAGGTGTTACTTGATGAACTTTGCGACTTAAAGAGAAAG
ttttcattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcttctgtactatactactattacatgaaatttggaatgcttcgccatgttgctatccaagtgacactcttctatgcatgttttcatttgcatttggcagACTCAGGTGTTACTTGATGAACTTTGCGACTTAAAGAGAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
tcttctg
- - - - - - - - - - - -catgaaa
- - - - - - - - - - - - - - - - - - atgcttc
- - - - - - - - - - - - - - - - - - - - - - - -tgttgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - ccaagtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tttcatt