1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...atttattttataccgttacatgatttcatccttgttctacttaaaaattgtaccttctaaaatctggataaaaaaactgcctgatctgtttgttgcacagTGCTACATCCAACAGTATACTGGACAAAGCTATAGATTCAGAGGACGCTCAGCATCATGACTTTCTTAGGCTG
species | Zea mays |
transcript | GRMZM2G070708_T02 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CAATTAGAAGAACAGAAGGGAATAGTTATCCGCTTCACTATCGGGCACAG TGCTACATCCAACAGTATACTGGACAAAGCTATAGATTCAGAGGACGCTCAEST: gi|211169871|gb|FL077600.1|FL077600
genomic: CAATTAGAAGAACAGAAGGGAATAGTTATCCGCTTCACTATCGGGCACAGgtaaacagat ... tgttgcacagTGCTACATCCAACAGTATACTGGACAAAGCTATAGATTCAGAGGACGCTCA
EST: TAGAAGAACAGAAGGGAATAGTTATCCGCTTCACTATCGGGCACAG TGCTACATCCAACAGTATACTGGACAAAGCTATAGATTCAGAGGACGCTCAEST: gi|148993654|gb|EE033841.2|EE033841
genomic: TAGAAGAACAGAAGGGAATAGTTATCCGCTTCACTATCGGGCACAGgtaaacagat ... tgttgcacagTGCTACATCCAACAGTATACTGGACAAAGCTATAGATTCAGAGGACGCTCA
EST: CAATTAGAAGAACAGAAGGGAATAGTTATCCGCTTCACTATCGGGCACAG TGCTACATCCCACAGTATACTGGACAAAGCTATAGATTCAGAGGACGCTCAEST: gi|71447666|gb|DR828716.1|DR828716
genomic: CAATTAGAAGAACAGAAGGGAATAGTTATCCGCTTCACTATCGGGCACAGgtaaacagat ... tgttgcacagTGCTACATCCAACAGTATACTGGACAAAGCTATAGATTCAGAGGACGCTCA
EST: CAATTAGAAGAACAGAAGGGAATAGTTATCCGCTTCACTATCGGGCACAG TGCTACATCCAACAGTATACTGGACAAAGCTATAGATTCAGAGGACGCTCA
genomic: CAATTAGAAGAACAGAAGGGAATAGTTATCCGCTTCACTATCGGGCACAGgtaaacagat ... tgttgcacagTGCTACATCCAACAGTATACTGGACAAAGCTATAGATTCAGAGGACGCTCA
aattgtaccttctaaaatctggataaaaaaactgcctgatctgtttgttgcacagTGCTACATCCAACAGTATACTGGACAAAGCTATAGATTCAGAGGACGCTCAGCATCATGACTTTCTTAGGCTG
tctgttt CT-rich tract
ataaaaaaact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atttattttataccgttacatgatttcatccttgttctacttaaaaattgtaccttctaaaatctggataaaaaaactgcctgatctgtttgttgcacagTGCTACATCCAACAGTATACTGGACAAAGCTATAGATTCAGAGGACGCTCAGCATCATGACTTTCTTAGGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA