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...gtgattttggtattgtagaactttgttacatattggtttgtactttgggatatgtaatttacttcgcacatctggtccctaagaacaaacaaaattgcagGTATAACATGGTGAAACAAGGTCTCATCAGCGACCCTGTTTTCTCTTTCTGGTTTAACCGACATGCTGATGAAGGAGAAGGTGGTGAAATTGTGTTTGGT
species | Zea mays |
transcript | GRMZM2G065757_T02 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CTTGGGCTAGGCTTTCAAGAAATCTCTGTTGGGAATGCAACACCAGTGTG GTATAACATGGTGAAACAAGGTCTCATCAGCGACCCTGTTTTCTCTTTCTGEST: gi|149078470|gb|EE167250.2|EE167250
genomic: CTTGGGCTAGGCTTTCAAGAAATCTCTGTTGGGAATGCAACACCAGTGTGgtaagctcgt ... aaaattgcagGTATAACATGGTGAAACAAGGTCTCATCAGCGACCCTGTTTTCTCTTTCTG
EST: CTTGGGCTAGGCTTTCAAGAAATCTCTGTTGGGAATGCAACACCAGTGTG GTATAACATGGTGAAACAAGGTCTCATCAGCGACCCTGTTTTCTCTTTCTGEST: gi|32830382|gb|CD970060.1|CD970060
genomic: CTTGGGCTAGGCTTTCAAGAAATCTCTGTTGGGAATGCAACACCAGTGTGgtaagctcgt ... aaaattgcagGTATAACATGGTGAAACAAGGTCTCATCAGCGACCCTGTTTTCTCTTTCTG
EST: CTTGGGCTAGGCTTTCAAGAAATCTCTGTTGGGAATGCAACACCAGTGTG GTATAACATGGTGAAACAAGGTCTCATCAGCGACCCTGTTTTCTCGTTCTGEST: gi|32840007|gb|CD979688.1|CD979688
genomic: CTTGGGCTAGGCTTTCAAGAAATCTCTGTTGGGAATGCAACACCAGTGTGgtaagctcgt ... aaaattgcagGTATAACATGGTGAAACAAGGTCTCATCAGCGACCCTGTTTTCTCTTTCTG
EST: CTTGGGCTAGGCTTTCAAGAAATCTCTGTTGGGAATGCAACACCAGTGTG GTATAACATGGTGAAACGAGGTCTCATCAGCGACCCTGTTTTCTCGGTCTGEST: gi|32850768|gb|CD990449.1|CD990449
genomic: CTTGGGCTAGGCTTTCAAGAAATCTCTGTTGGGAATGCAACACCAGTGTGgtaagctcgt ... aaaattgcagGTATAACATGGTGAAACAAGGTCTCATCAGCGACCCTGTTTTCTCTTTCTG
EST: CTTGGGCTAGGCTTTCAAGAAATCTCTGTTGGGAATGCAACACCAGTGTG GTATAACATGGTGAAACAAGGTCTCATCAGCGACCCTGTTTTCTCGTTCTGEST: gi|50338072|gb|CO533198.1|CO533198
genomic: CTTGGGCTAGGCTTTCAAGAAATCTCTGTTGGGAATGCAACACCAGTGTGgtaagctcgt ... aaaattgcagGTATAACATGGTGAAACAAGGTCTCATCAGCGACCCTGTTTTCTCTTTCTG
EST: TTGGGCTAGGCTTTCAAGAAATCTCTGTTGGGAAATGCA-CACCAGTGTG GTATAACATGGTGAAACAAGGTEST: gi|32839505|gb|CD979186.1|CD979186
genomic: TTGGGCTAGGCTTTCAAGAAATCTCTGTTGGGAA-TGCAACACCAGTGTGgtaagctcgt ... aaaattgcagGTATAACATGGTGAAACAAGGT
EST: CTTGGGCTAGGCTTTCAAGAAATCTCTGTTGGGAATGCAACACCAGTGTG GTATAACATGGTGAAACAAGGTCTCATCAGCGACCCTGTTTTTCTCGTTTCEST: gi|33097906|gb|CF057866.1|CF057866
genomic: CTTGGGCTAGGCTTTCAAGAAATCTCTGTTGGGAATGCAACACCAGTGTGgtaagctcgt ... aaaattgcagGTATAACATGGTGAAACAAGGTCTCATCAGCGACCCTGTTTT-CTC-TTTC
EST: CTTGGGCTAGGCTTTCAAGAAATCTCTGTTGGGAATGCAACACCAGTGTG GTATAACATGGTGAAACCAAGGTCTCATCAGCGACCCTGTTTTCTCGTTCTEST: gi|148956524|gb|EC902364.2|EC902364
genomic: CTTGGGCTAGGCTTTCAAGAAATCTCTGTTGGGAATGCAACACCAGTGTGgtaagctcgt ... aaaattgcagGTATAACATGGTGAAA-CAAGGTCTCATCAGCGACCCTGTTTTCTCTTTCT
EST: CTTGGGCTAGGCTTTCAAGAAATCTCTGTTGGGAATGCAACACCAGTGTG GTATAACATGGTGAAACAAGGTCTCATCAGCGACCCTGTTTTCTCTTTCTGEST: gi|148931369|gb|EC874278.2|EC874278
genomic: CTTGGGCTAGGCTTTCAAGAAATCTCTGTTGGGAATGCAACACCAGTGTGgtaagctcgt ... aaaattgcagGTATAACATGGTGAAACAAGGTCTCATCAGCGACCCTGTTTTCTCTTTCTG
EST: CTTGGGCTAGGCTTTCAAGAAATCTCTGTTGGGAATGCAACACCAGTGTG GTATAACATGGTGAAACAAGGTCTCATCAGCGACCCTGTTTTCTCTTTCTGEST: gi|211224724|gb|FL222442.1|FL222442
genomic: CTTGGGCTAGGCTTTCAAGAAATCTCTGTTGGGAATGCAACACCAGTGTGgtaagctcgt ... aaaattgcagGTATAACATGGTGAAACAAGGTCTCATCAGCGACCCTGTTTTCTCTTTCTG
EST: CTTGGGCTAGGCTTTCAAGAAATCTCTGTTGGGAATGCAACACCAGTGTG GTATAACATGGTGAAACAAGGTCTCATCAGCGACCCTGTTTTCTCTTTCTGEST: gi|33099258|gb|CF059218.1|CF059218
genomic: CTTGGGCTAGGCTTTCAAGAAATCTCTGTTGGGAATGCAACACCAGTGTGgtaagctcgt ... aaaattgcagGTATAACATGGTGAAACAAGGTCTCATCAGCGACCCTGTTTTCTCTTTCTG
EST: CTTGGGCTAGGCTTTCAAGAAATCTCTGTTGGGAATGCAACACCAGTGTG GTATAACATGGTGAAACAAGGTCTCATCAGCGACCCTGTTTTCTCGTTCTG
genomic: CTTGGGCTAGGCTTTCAAGAAATCTCTGTTGGGAATGCAACACCAGTGTGgtaagctcgt ... aaaattgcagGTATAACATGGTGAAACAAGGTCTCATCAGCGACCCTGTTTTCTCTTTCTG
tgggatatgtaatttacttcgcacatctggtccctaagaacaaacaaaattgcagGTATAACATGGTGAAACAAGGTCTCATCAGCGACCCTGTTTTCTCTTTCTGGTTTAACCGACATGCTGATGAAGGAGAAGGTGGTGAAATTGTGTTTGGT
tatgtaatttactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgattttggtattgtagaactttgttacatattggtttgtactttgggatatgtaatttacttcgcacatctggtccctaagaacaaacaaaattgcagGTATAACATGGTGAAACAAGGTCTCATCAGCGACCCTGTTTTCTCTTTCTGGTTTAACCGACATGCTGATGAAGGAGAAGGTGGTGAAATTGTGTTTGGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - ttttggt
- - - - - - - - - - - - - - - - - - - - - - - - -atatgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcacatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaacaaa