1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtatgcctcctgatctcagtttttcctcaatattgtaaaattgtagagaacgctgtgctgattggcagaaatccattggaagactttctgcagctctatctcagcatatgggatatttctttttacctgaatttgaatggaaactttggtggcttatgtccttaagaaatacttcgcagGTTTTGGTTATTGGTGGTGGTGATGGAGGTGTACTTCGAGAGGTATCCAGGCATAGTTCAGTGGAGTCCATTGACATATGTGAGATTGATCAGCTGGTTA
species | Zea mays |
transcript | GRMZM2G060896_T04 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AGGAAATGATTACTCACCTGCCACTTTGCTCAATTCCATCCCCTAAAAAA GTTTTGGTTATTGGTGGTGGTGATGGAGGTGTACTTCGAGAGGTATCCAGGEST: gi|71305271|gb|DR788769.1|DR788769
genomic: AGGAAATGATTACTCACCTGCCACTTTGCTCAATTCCATCCCCTAAAAAAgtatgcctcc ... tacttcgcagGTTTTGGTTATTGGTGGTGGTGATGGAGGTGTACTTCGAGAGGTATCCAGG
EST: AGGAAATGATTACTCACCTGCCACTTTGCTCAATTCCATCCCCTAAAAAA GTTTTGGTTATTGGTGGTGGTGATGGAGGTGTACTTCGAGAGGTATCCAGGEST: gi|87153794|gb|DY398583.1|DY398583
genomic: AGGAAATGATTACTCACCTGCCACTTTGCTCAATTCCATCCCCTAAAAAAgtatgcctcc ... tacttcgcagGTTTTGGTTATTGGTGGTGGTGATGGAGGTGTACTTCGAGAGGTATCCAGG
EST: AGGAAATGATTACTCACCTGCCACTTTGCTCAATTCCATCCCCTAAAAAA GTTTTGGTTATTGGTGGTGGTGATGGAGGTGTACTTCGAGAGGTATCCAGGEST: gi|19057747|gb|BM736414.1|BM736414
genomic: AGGAAATGATTACTCACCTGCCACTTTGCTCAATTCCATCCCCTAAAAAAgtatgcctcc ... tacttcgcagGTTTTGGTTATTGGTGGTGGTGATGGAGGTGTACTTCGAGAGGTATCCAGG
EST: AGGAAATGATTACTCACCTGCCACTTTGCTCAATTCCATCCCCTAAAAAA GTTTTGGTTATTGGTGGTGGTGATGGAGGTGTACTTCGAGAGGTATCCAGGEST: gi|19058302|gb|BM736969.1|BM736969
genomic: AGGAAATGATTACTCACCTGCCACTTTGCTCAATTCCATCCCCTAAAAAAgtatgcctcc ... tacttcgcagGTTTTGGTTATTGGTGGTGGTGATGGAGGTGTACTTCGAGAGGTATCCAGG
EST: TGCCACTTTGCTCAATTCCATCCCCTAAAAAA GTTTTGGTTATTGGTGGTGGTGATGGAGGTGTACTTCGAGAGGTATCCAGGEST: gi|74240569|gb|DT648483.1|DT648483
genomic: TGCCACTTTGCTCAATTCCATCCCCTAAAAAAgtatgcctcc ... tacttcgcagGTTTTGGTTATTGGTGGTGGTGATGGAGGTGTACTTCGAGAGGTATCCAGG
EST: AGGAAATGATTACTCACCTGCCACTTTGCTCAATTCCATCCCCTAAAAAA GTTTTGGTTATTGGTGGTGGTGATGGAGGTGTACTTCGAGAGGTATCCAGGEST: gi|6918561|gb|AW400091.1|AW400091
genomic: AGGAAATGATTACTCACCTGCCACTTTGCTCAATTCCATCCCCTAAAAAAgtatgcctcc ... tacttcgcagGTTTTGGTTATTGGTGGTGGTGATGGAGGTGTACTTCGAGAGGTATCCAGG
EST: AGGAAATGATTACTCACCTGCCACTTTGCTCAATTCCATCCCCTAAAAAA GTTTTGGTTATTGGTGGTGGTGATGGAGGTGTACTTCGAGAGGTATCCAGGEST: gi|22490603|gb|BU050526.1|BU050526
genomic: AGGAAATGATTACTCACCTGCCACTTTGCTCAATTCCATCCCCTAAAAAAgtatgcctcc ... tacttcgcagGTTTTGGTTATTGGTGGTGGTGATGGAGGTGTACTTCGAGAGGTATCCAGG
EST: CCATCCCCTAAAAAA GTTTTGGTTATTGGTGGTGGTGATGGAGGTGTACTTCGAGAGGTATCCAGG
genomic: CCATCCCCTAAAAAAgtatgcctcc ... tacttcgcagGTTTTGGTTATTGGTGGTGGTGATGGAGGTGTACTTCGAGAGGTATCCAGG
acctgaatttgaatggaaactttggtggcttatgtccttaagaaatacttcgcagGTTTTGGTTATTGGTGGTGGTGATGGAGGTGTACTTCGAGAGGTATCCAGGCATAGTTCAGTGGAGTCCATTGACATATGTGAGATTGATCAGCTGGTTA
ttaagaaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgcctcctgatctcagtttttcctcaatattgtaaaattgtagagaacgctgtgctgattggcagaaatccattggaagactttctgcagctctatctcagcatatgggatatttctttttacctgaatttgaatggaaactttggtggcttatgtccttaagaaatacttcgcagGTTTTGGTTATTGGTGGTGGTGATGGAGGTGTACTTCGAGAGGTATCCAGGCATAGTTCAGTGGAGTCCATTGACATATGTGAGATTGATCAGCTGGTTA
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG