Sequence
atgc intronic sequence ATGC exonic sequencegcaagagctttgattgattgatcattcatcttcacgatactctaggttagtcatatactgttgcatgtagccctaggaatcaaataaattgttttctttggcttatgctatatgctgtatatttgacagGTCTGGTTTCGTGTTAATGAGCTACTGTCGCTTGAGTTACAGAAAAGGTTACCTGATGGACCTTCACCAGCCGTTTCCTTGAGCTCGCAAGATGAAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G051079_T01 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os02g37880.3 (Oryza sativa), 3'ss of exon 5
gcaagagctttgattgattgatcattcatcttcacgatactctaggttagtcatatactgttgcatgtagccctaggaatcaaataa--attgttttctttggcttatgctatatgctgtatatttgacagGTCTGGTTTCGTGTTAATGAGCTACTGTCGCTTGAGTTACAGAAAAGGTTACCTGATGGACCTTCACCAGCCGTTTCCTTGAGCTCGCAAGATGAAG
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gcaagagctttgattgattggccattcatctccatgatact--aggttagtcatagactgttgcatgtagccttaggaaccacataagcatatttttctaaatctgatgttagactttgtacatttgacagGTCTGGTTTCGTGTAAATGAACTACTACCTCTCGAGTTACAGAAAAATCTACCCGATGGAGCTTCGTCAGGCATTTCCATGAGTTTGCAAGATGAAG
upper sequence: GRMZM2G051079_T01 (Zea mays), 3'ss of exon 5
lower sequence: GLYMA15G42460.1 (Glycine max), 3'ss of exon 6
gcaagagctttgattgattgatcattcatcttcacgatactctaggttagtcatata----ctgttgcatgtagccctaggaatcaaata-aattgttttctttggcttatgctatatgctgtatatt-----tgacagGTCTGGTTTCGTGTTAATGAGCTACTGTCGCTTGAGTTACAGAAAAGGTTACCTGATGGACCTTCACCAGCCGTTTCCTTGAGCTCGCAAG-ATGAAG
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gcaagcgctttgcttgattgaccattcatctccat--cagtttaggttggtcatagatcatccattgatagcattcataggtacgtactagaattagggcaattaattactgactttggatgtacttccatggtggcagGTCTGGTTTCGTGTTAATGAGCAACTACCTATTAATTTACAGAAGTCGTTACCTGACAGAC---CACCTGA-ATCGCCCTCATCTAACAATCATGAAG
upper sequence: GRMZM2G051079_T01 (Zea mays), 3'ss of exon 5
lower sequence: GLYMA08G15920.1 (Glycine max), 3'ss of exon 6
gcaagagctttgattgattgatcattcatcttcacgatactctaggttagtcatatactgttgcatgtagccctaggaatcaaataaattgttttctttggcttatgctatatgctgtatatttgacagGTCTGGTTTCGTGTTAATGAGCTACTGTCGCTTGAGTTACAGAAAAGGTTACCTGATGGACCTTC--ACCAGCCGTTTCCTTGAGCTCGC-AAGATGAAG
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--------------------------------------gtcatagatcatccat-caatagcattcataggtactagaattagggcaattaattac--tgactttgg--atgttcttccgtggtggcagGTCTGGTTTCGTGTTAATGAGCAACTACCTATTAATTTACAGAAGTCATTACCTGACAGACCACCTGAATTGCCCTCATCCAACGATCATGAAGGTGACGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|101396493|gb|EB820173.1|EB820173EST: TCAAAGATATGCTGGAAGCCTCACCAAATGCCAGACCAGACATCACACAG GTCTGGTTTCGTGTTAATGAGCTACTGTCGCTTGAGTTACAGAAAAGGTTA
genomic: TCAAAGATATGCTGGAAGCCTCACCAAATGCCAGACCAGACATCACACAGgcaagagctt ... tatttgacagGTCTGGTTTCGTGTTAATGAGCTACTGTCGCTTGAGTTACAGAAAAGGTTA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aggaatcaaataaattgttttctttggcttatgctatatgctgtatatttgacagGTCTGGTTTCGTGTTAATGAGCTACTGTCGCTTGAGTTACAGAAAAGGTTACCTGATGGACCTTCACCAGCCGTTTCCTTGAGCTCGCAAGATGAAG
aaataaattgttttct TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
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gcaagagctttgattgattgatcattcatcttcacgatactctaggttagtcatatactgttgcatgtagccctaggaatcaaataaattgttttctttggcttatgctatatgctgtatatttgacagGTCTGGTTTCGTGTTAATGAGCTACTGTCGCTTGAGTTACAGAAAAGGTTACCTGATGGACCTTCACCAGCCGTTTCCTTGAGCTCGCAAGATGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG