1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtactaagtgctacttgtaccatggctgtgttgtttcgtctttcttttctgattaatcttctttgcaaggttagtgtcctattttgaattttatttattactttctgggggctagATCAAAGAGTCGTCAGCAGCATATTGCAGCGATGAAGTAGAGGAAGAAGAAGCTGATGTACGGCCTAATTCAGGGAGTGATGAGGACCTAAGTGAAGAAG
species | Zea mays |
transcript | GRMZM2G048553_T02 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TTCTTTCTTCGTCTGGTTCTCCGAAGAAGTCGGATGGTCATTGTAAAGAG ATCAAAGARGTCGTCAGCAGCATATTGCAGCGATGAAGTEST: gi|211305952|gb|FL325095.1|FL325095
genomic: TTCTTTCTTCGTCTGGTTCTCCGAAGAAGTCGGATGGTCATTGTAAAGAGgtactaagtg ... tgggggctagATCAAAGA-GTCGTCAGCAGCATATTGCAGCGATGAAGT
EST: TTCTTTCTTCGTCTGGTTCTCCGAAGAAGTCGGATGGTCATTGTAAAGAG ATCAAAGAGTCGTCAGCAGCATATTGCAGCGATGAAGTAGAGGAAGAAGAAEST: gi|211415172|gb|FL354807.1|FL354807
genomic: TTCTTTCTTCGTCTGGTTCTCCGAAGAAGTCGGATGGTCATTGTAAAGAGgtactaagtg ... tgggggctagATCAAAGAGTCGTCAGCAGCATATTGCAGCGATGAAGTAGAGGAAGAAGAA
EST: TTCTTTCTTCGTCTGGTTCTCCGAAGAAGTCGGATGGTCATTGTAAAGAG ATCAAAGAGTCGTCAGCAGCATATTGCAGCGATGAAGTAGAGGAAGAAGAA
genomic: TTCTTTCTTCGTCTGGTTCTCCGAAGAAGTCGGATGGTCATTGTAAAGAGgtactaagtg ... tgggggctagATCAAAGAGTCGTCAGCAGCATATTGCAGCGATGAAGTAGAGGAAGAAGAA
ctttgcaaggttagtgtcctattttgaattttatttattactttctgggggctagATCAAAGAGTCGTCAGCAGCATATTGCAGCGATGAAGTAGAGGAAGAAGAAGCTGATGTACGGCCTAATTCAGGGAGTGATGAGGACCTAAGTGAAGAAG
ttactttct CT-rich tract
tattttgaattttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactaagtgctacttgtaccatggctgtgttgtttcgtctttcttttctgattaatcttctttgcaaggttagtgtcctattttgaattttatttattactttctgggggctagATCAAAGAGTCGTCAGCAGCATATTGCAGCGATGAAGTAGAGGAAGAAGAAGCTGATGTACGGCCTAATTCAGGGAGTGATGAGGACCTAAGTGAAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG