1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tgataaatattgcagcatctgttcatgtagaatttgagtcattcgttgcatattaattggttacctagtcaggattaactttttatactgccataaacagATAGGAAGCCACCAGGTGTTGGCCGTGGAAGAGGAAGGGGGGACGTCGGTGCTAAACCTGGAGGCAGAGGCATTGGACGTGGCCAAGATGATGGAGGTAG
species | Zea mays |
transcript | GRMZM2G038606_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GTGAYTGACAAGGTTCAGGAGGAAACTTCTAAAAGCCGATCAG ATAGGAAGCCACCAGGTGTTGGCCGTGTA-GANGAAGGGGGGACGTCGGTGEST: gi|211533729|gb|FL071653.1|FL071653
genomic: GTGATTGACAAGGTTCAGGAGGAAACTTCTAAAAGCCGATCAGgtatggagtg ... ccataaacagATAGGAAGCCACCAGGTGTTGGCCGTGGAAGAGGAAGGGGGGACGTCGGTG
EST: GTGATTGACAAGGTTCAGGAGGAAACTTCTAAAAGCCGATCAG ATAGGAAGCCACCAGGTGTTGGCCGTGGAAGAGGAAGGGGGGACGTCGGTGEST: gi|211077444|gb|FL076220.1|FL076220
genomic: GTGATTGACAAGGTTCAGGAGGAAACTTCTAAAAGCCGATCAGgtatggagtg ... ccataaacagATAGGAAGCCACCAGGTGTTGGCCGTGGAAGAGGAAGGGGGGACGTCGGTG
EST: GTGATTGACAAGGTTCAGGAGAAAACTTCTAAAAGCCGATCAG ATAGGAAGCCACCAGGTGTTGGCCGTGGAAAGAGGAAGGGGGEST: gi|211077445|gb|FL076221.1|FL076221
genomic: GTGATTGACAAGGTTCAGGAGGAAACTTCTAAAAGCCGATCAGgtatggagtg ... ccataaacagATAGGAAGCCACCAGGTGTTGGCCGTGGAA-GAGGAAGGGGG
EST: GTGATTGACAAGGTTCAGGAGGAAACTTCTAAAAGCCGATCAG ATAGGAAGCCACCAGGTGTTGGCCGTGGAAGAGGAAGGGGGGACGTEST: gi|78107776|gb|DV526194.1|DV526194
genomic: GTGATTGACAAGGTTCAGGAGGAAACTTCTAAAAGCCGATCAGgtatggagtg ... ccataaacagATAGGAAGCCACCAGGTGTTGGCCGTGGAAGAGGAAGGGGGGACGT
EST: GTGATTGACAAGGTTCAGGAGGAAACTTCTAAAAGCCGATCAG ATAGGAAGCCACCAGGTGTTGGCCGTGGAAGAGGAAGGGGGGACGTCGGTGEST: gi|211077441|gb|FL076217.1|FL076217
genomic: GTGATTGACAAGGTTCAGGAGGAAACTTCTAAAAGCCGATCAGgtatggagtg ... ccataaacagATAGGAAGCCACCAGGTGTTGGCCGTGGAAGAGGAAGGGGGGACGTCGGTG
EST: GTGATTGACAAGGTTCAGGAGGAAACTTCTAARAGCCGATCAG ATAGGAAGCCACCAEST: gi|211536732|gb|FL071661.1|FL071661
genomic: GTGATTGACAAGGTTCAGGAGGAAACTTCTAAAAGCCGATCAGgtatggagtg ... ccataaacagATAGGAAGCCACCA
EST: GTGATTGACAAGGTTCAGGAGGAAACTTCTAAAAGCCGATCAG ATAGGAAGCCACCAGGTGTTGGCCGTGGAAGAGGAAGGGGGGACGTCGGTTEST: gi|78026896|gb|DV495283.1|DV495283
genomic: GTGATTGACAAGGTTCAGGAGGAAACTTCTAAAAGCCGATCAGgtatggagtg ... ccataaacagATAGGAAGCCACCAGGTGTTGGCCGTGGAAGAGGAAGGGGGGACGTCGGTG
EST: GTGATTGACAAGGTTCAGGAGGAAACTTCTAAAAGCCGATCAG ATAGGAAGCCACCAGGTGTTGGCCGTGGAAGAGGAAGGGGGGACGTCGGTTEST: gi|94474355|gb|EB703313.1|EB703313
genomic: GTGATTGACAAGGTTCAGGAGGAAACTTCTAAAAGCCGATCAGgtatggagtg ... ccataaacagATAGGAAGCCACCAGGTGTTGGCCGTGGAAGAGGAAGGGGGGACGTCGGTG
EST: GTGATTGACAAGGTTCAGGAGGAAACTTTTAAAAGCCGATCAG ATAGGAAGCCACCAGGTGTTGGCCGTGGAAGAGGAAGGGGGGACGTCGGTGEST: gi|32868742|gb|CF008424.1|CF008424
genomic: GTGATTGACAAGGTTCAGGAGGAAACTTCTAAAAGCCGATCAGgtatggagtg ... ccataaacagATAGGAAGCCACCAGGTGTTGGCCGTGGAAGAGGAAGGGGGGACGTCGGTG
EST: GTGATTGACAAGGTTCAGGAGGAAACTTCTAAAAGCCGATCAG ATAGGAAGCCACCAGGTGTTGGCCGTGGAAGAGGAAGGGGGGACGTCGGTGEST: gi|211074701|gb|FL076206.1|FL076206
genomic: GTGATTGACAAGGTTCAGGAGGAAACTTCTAAAAGCCGATCAGgtatggagtg ... ccataaacagATAGGAAGCCACCAGGTGTTGGCCGTGGAAGAGGAAGGGGGGACGTCGGTG
EST: GTGATTGACAAGGTTCAGGAGAAAACTTCTAAAAGCCGATCAG ATAGGAAGCCACCAGGTGTTGGCCGTGGAAGEST: gi|31358015|gb|CD442372.1|CD442372
genomic: GTGATTGACAAGGTTCAGGAGGAAACTTCTAAAAGCCGATCAGgtatggagtg ... ccataaacagATAGGAAGCCACCAGGTGTTGGCCGTGGAAG
EST: GTGATTGACAAGGTTCAGGAGGAAACTTCTAAAAGCCGATCAG ATAGGAAGCCACCAGGTGTTGGCCGTGGAAGAGGAAGGGGGGACGTCGGTTEST: gi|18179645|gb|BM380855.1|BM380855
genomic: GTGATTGACAAGGTTCAGGAGGAAACTTCTAAAAGCCGATCAGgtatggagtg ... ccataaacagATAGGAAGCCACCAGGTGTTGGCCGTGGAAGAGGAAGGGGGGACGTCGGTG
EST: GACAAGGTTCAGGAGGAAACTTCTAAAAGCCGATCAG ATAGGAAGCCACCAGGTGTTGGCCGTGGAAGAGGAAGGGGGGACGTCGGTGEST: gi|211533734|gb|FL071658.1|FL071658
genomic: GACAAGGTTCAGGAGGAAACTTCTAAAAGCCGATCAGgtatggagtg ... ccataaacagATAGGAAGCCACCAGGTGTTGGCCGTGGAAGAGGAAGGGGGGACGTCGGTG
EST: GTGATTGACAAGGTTCAGGAGGAAACTTCTAAAAGCCGATCAG ATAGGAAGCCACCAGGTGTTGGCCGTGGAAGAGGAAGGGGGGACGTCGGTTEST: gi|211533732|gb|FL071656.1|FL071656
genomic: GTGATTGACAAGGTTCAGGAGGAAACTTCTAAAAGCCGATCAGgtatggagtg ... ccataaacagATAGGAAGCCACCAGGTGTTGGCCGTGGAAGAGGAAGGGGGGACGTCGGTG
EST: GTGATTGACAAGGTTCAGGAGGAAACTTCTAAAAGCCGATCAG ATAGGAAGCCACCAGGTGTTGGCCGTGGAAGAGGAAGGGGGGACGTCGGTGEST: gi|5343007|gb|AI795312.1|AI795312
genomic: GTGATTGACAAGGTTCAGGAGGAAACTTCTAAAAGCCGATCAGgtatggagtg ... ccataaacagATAGGAAGCCACCAGGTGTTGGCCGTGGAAGAGGAAGGGGGGACGTCGGTG
EST: GTGATTGACAAGGTTCAGGAGGAAACTTCTAAAAGCCGATCAG ATAGGAAGCCACCAGGTGTTGGCCGTGGAAGAGGAAGGGGGGACGTCGGTTEST: gi|89252869|gb|DY624655.1|DY624655
genomic: GTGATTGACAAGGTTCAGGAGGAAACTTCTAAAAGCCGATCAGgtatggagtg ... ccataaacagATAGGAAGCCACCAGGTGTTGGCCGTGGAAGAGGAAGGGGGGACGTCGGTG
EST: GTGATTGACAAGGTTCAGGAGGAAACTTCTAAAAGCCGATCAG ATAGGAAGCCACCAGGTGTTGGCCGTGGAAGAGGAAGGGGGGACGTCGGTGEST: gi|211077437|gb|FL076213.1|FL076213
genomic: GTGATTGACAAGGTTCAGGAGGAAACTTCTAAAAGCCGATCAGgtatggagtg ... ccataaacagATAGGAAGCCACCAGGTGTTGGCCGTGGAAGAGGAAGGGGGGACGTCGGTG
EST: GTGATTGACAAGGTTCAGGAGGAAACTTCTAAAAGCCGATCAG ATAGGAAGCCACCAGGTGTTGGCCGTGGAAEST: gi|84970052|gb|DW468427.1|DW468427
genomic: GTGATTGACAAGGTTCAGGAGGAAACTTCTAAAAGCCGATCAGgtatggagtg ... ccataaacagATAGGAAGCCACCAGGTGTTGGCCGTGGAA
EST: GTGATTGACAAGGTTCAGGAGGAAACTTCTAAAAGCCGATCAG ATAGGAAGCTACCAGGTGTTGGCCGTGGAAGAGGAAGGGGGGACGTCGGTGEST: gi|211533730|gb|FL071654.1|FL071654
genomic: GTGATTGACAAGGTTCAGGAGGAAACTTCTAAAAGCCGATCAGgtatggagtg ... ccataaacagATAGGAAGCCACCAGGTGTTGGCCGTGGAAGAGGAAGGGGGGACGTCGGTG
EST: GTGATTGACAAGGNTCAGGAGGAAACTTCTAAAAGCCGATCAG ATAGGAAGCCACCAGGEST: gi|12969926|gb|BG266727.1|BG266727
genomic: GTGATTGACAAGGTTCAGGAGGAAACTTCTAAAAGCCGATCAGgtatggagtg ... ccataaacagATAGGAAGCCACCAGG
EST: GTGATTGACAAGGTTCAGGAGGAAACTTCTAAAAGCCGATCAG ATAGGAAGCCACCAGGTGTTGGCCGTGGAAGAGGAAGGGGGGACGTCGGTTEST: gi|211536733|gb|FL071662.1|FL071662
genomic: GTGATTGACAAGGTTCAGGAGGAAACTTCTAAAAGCCGATCAGgtatggagtg ... ccataaacagATAGGAAGCCACCAGGTGTTGGCCGTGGAAGAGGAAGGGGGGACGTCGGTG
EST: GTGATTGACAAGGTTCAGGAGGAAACTTCTAAAAGCCGATCAG ATAGGAAGCCACCAGEST: gi|211533727|gb|FL071651.1|FL071651
genomic: GTGATTGACAAGGTTCAGGAGGAAACTTCTAAAAGCCGATCAGgtatggagtg ... ccataaacagATAGGAAGCCACCAG
EST: GTGATTGACAAGGTTCAGGAGGAAACTTCTAAAAGCCGATCAG ATAGGAAGCCACCAGGTGTTGGCCGTGGAAGAGGAAGGGGGGACGTCGGTTEST: gi|78115516|gb|DV533904.1|DV533904
genomic: GTGATTGACAAGGTTCAGGAGGAAACTTCTAAAAGCCGATCAGgtatggagtg ... ccataaacagATAGGAAGCCACCAGGTGTTGGCCGTGGAAGAGGAAGGGGGGACGTCGGTG
EST: GTGATTGACAAGGTTCAGGAGGAAACTTCTAAAAGCCGATCAG ATAGGAAGCCACCAGGTGTTGGCCGTGGAAGAGGAAGGGGGGACGTCGGTGEST: gi|211536730|gb|FL071659.1|FL071659
genomic: GTGATTGACAAGGTTCAGGAGGAAACTTCTAAAAGCCGATCAGgtatggagtg ... ccataaacagATAGGAAGCCACCAGGTGTTGGCCGTGGAAGAGGAAGGGGGGACGTCGGTG
EST: GTGATTGACAAGGTTCAGGAGGAAACTTCTAAAAGCCGATCAG ATAGGAAGCCACCAGGTGTTGGCCGTGGAAGAGGAAGGGGGGACGTCGGTTEST: gi|211533733|gb|FL071657.1|FL071657
genomic: GTGATTGACAAGGTTCAGGAGGAAACTTCTAAAAGCCGATCAGgtatggagtg ... ccataaacagATAGGAAGCCACCAGGTGTTGGCCGTGGAAGAGGAAGGGGGGACGTCGGTG
EST: GTGATTGACAAGGTTCAGGAGGAAACTTCTAAAAGCCGATCAG ATAGGAAGCCACCAGGTGTTGGCCGTGGAWGAGGAAGGGGGGACGTCGGTTEST: gi|211077434|gb|FL076210.1|FL076210
genomic: GTGATTGACAAGGTTCAGGAGGAAACTTCTAAAAGCCGATCAGgtatggagtg ... ccataaacagATAGGAAGCCACCAGGTGTTGGCCGTGGAAGAGGAAGGGGGGACGTCGGTG
EST: GTGATTGACAAGGTTCCAGGAGGAAACTTCTAAAAGCCGATCAG ATAGGAAGCCACCAGGTGTTGEST: gi|211074700|gb|FL076205.1|FL076205
genomic: GTGATTGACAAGGTTC-AGGAGGAAACTTCTAAAAGCCGATCAGgtatggagtg ... ccataaacagATAGGAAGCCACCAGGTGTTG
EST: GTGATTGACAAGGTTCAGGAGGAAACTTCTAAAAGCCGATCAG ATAGGAAGCCACCAGGTGTEST: gi|9952507|gb|BE639090.1|BE639090
genomic: GTGATTGACAAGGTTCAGGAGGAAACTTCTAAAAGCCGATCAGgtatggagtg ... ccataaacagATAGGAAGCCACCAGGTGT
EST: GTGATTGACAAGGTTCAGGAGGAAACTTCTAAAAGCCGATCAG ATAGGAAGCCACCAGGTGTTGGCCGTGGAAGAGGAAGGGGGGACGTCGGTTEST: gi|78115517|gb|DV533905.1|DV533905
genomic: GTGATTGACAAGGTTCAGGAGGAAACTTCTAAAAGCCGATCAGgtatggagtg ... ccataaacagATAGGAAGCCACCAGGTGTTGGCCGTGGAAGAGGAAGGGGGGACGTCGGTG
EST: GTGATTGACAAGGTTCAGGAGGAAACTTCTAAAAGCCGATCAG ATAGGAAGCCACCAGGTGTTGGCCGTGGAAGAGGAAGGGGGGACGTCGGTGEST: gi|211536735|gb|FL071664.1|FL071664
genomic: GTGATTGACAAGGTTCAGGAGGAAACTTCTAAAAGCCGATCAGgtatggagtg ... ccataaacagATAGGAAGCCACCAGGTGTTGGCCGTGGAAGAGGAAGGGGGGACGTCGGTG
EST: GTGATTGACAAGGTTCAGGAGGAAACTTCTAAAAGCCGATCAG ATAGGAAGCCACCAGGTGTTGGCCGTGGAAGAGGAAEST: gi|76927712|gb|DV171333.1|DV171333
genomic: GTGATTGACAAGGTTCAGGAGGAAACTTCTAAAAGCCGATCAGgtatggagtg ... ccataaacagATAGGAAGCCACCAGGTGTTGGCCGTGGAAGAGGAA
EST: GTGATTGACAAGGTTCAGGAGGAAACTTTTAAAAGCCGATCAG ATAGGAAGCTACCAGGTGTTGGCCGTGGAAGAGGAAGGGGGGACGTCGGTG
genomic: GTGATTGACAAGGTTCAGGAGGAAACTTCTAAAAGCCGATCAGgtatggagtg ... ccataaacagATAGGAAGCCACCAGGTGTTGGCCGTGGAAGAGGAAGGGGGGACGTCGGTG
ttgcatattaattggttacctagtcaggattaactttttatactgccataaacagATAGGAAGCCACCAGGTGTTGGCCGTGGAAGAGGAAGGGGGGACGTCGGTGCTAAACCTGGAGGCAGAGGCATTGGACGTGGCCAAGATGATGGAGGTAG
gattaac putative branch site (score: 2)
attaactttttatact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgataaatattgcagcatctgttcatgtagaatttgagtcattcgttgcatattaattggttacctagtcaggattaactttttatactgccataaacagATAGGAAGCCACCAGGTGTTGGCCGTGGAAGAGGAAGGGGGGACGTCGGTGCTAAACCTGGAGGCAGAGGCATTGGACGTGGCCAAGATGATGGAGGTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
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