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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagatggacaatttattttattctccatttctattttaatgcaattctgcataccctactgaaatatccgggttactgaaaacagGGCGCAATCATGGCCGTCGGTGCATCAGAACCGACAGTTGTTGGTACAAAAGACGGTAGAATCGGGATCAAGAGCCAAATGCAG

Basic information

species Zea mays
transcript GRMZM2G036534_T02
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G036534_T02 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os12g08170.1 (Oryza sativa), 3'ss of exon 4
gtaagatggacaatttat--tttattctccatttctattttaatgcaatt--ctgcataccctactgaaatatccgggttactgaaaacagGGCGCAATCATGGCCGTCGGTGCATCAGAACCGACAGTTGTTGGTACAAAAGACGGTAGAATCGGGATCAAGAGCCAAATGCAG
|||||| | |   |  ||  |||| | || |||   |||  |||||   |  ||||||    ||    | ||||    || |||||||||||| |||||||||||||| ||  ||||| |||| ||| |||||||||||||||| ||||| || |||||||||| ||||||||||
gtaagacgaaatttccatcttttaatttctattatcattc-aatgctgcttgctgcatgatttatgttattatctttattgctgaaaacagGGTGCAATCATGGCCGTTGGATCATCACAACCAACACTTGTTGGTACAAAAGATGGTAGTATTGGGATCAAGAACCAAATGCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6539042|gb|AW225181.1|AW225181
EST:     TTGGTATGTTTGGAGTTGATAGGTTCGATGCAATACTGCCACCTGGAACT                         GGCGCAATCATGGCCGTCGGTGCATCAGAACCGACAGTTGTTGGTACAAAA
genomic: TTGGTATGTTTGGAGTTGATAGGTTCGATGCAATACTGCCACCTGGAACTgtaagatgga ... ctgaaaacagGGCGCAATCATGGCCGTCGGTGCATCAGAACCGACAGTTGTTGGTACAAAA
EST: gi|6865176|gb|AW360526.1|AW360526
EST:     TTGGTATGTTTGGAGTTGATAGGTTCGATGCAATACTGCCACCTGGAACT                         GGCGCAATCATGGCCGTCGGTGCATCAGAACCGACAGTTGTTGGTACAAAA
genomic: TTGGTATGTTTGGAGTTGATAGGTTCGATGCAATACTGCCACCTGGAACTgtaagatgga ... ctgaaaacagGGCGCAATCATGGCCGTCGGTGCATCAGAACCGACAGTTGTTGGTACAAAA
EST: gi|78106198|gb|DV524616.1|DV524616
EST:     TTGGTATGTTTGGAGTTGATAGGTTCGATGCAATACTGCCACCTGGAACT                         GGCGCAATCATGGCCGTCGGTGCATCAGAACCGACAGTTGTTGGTACAAAA
genomic: TTGGTATGTTTGGAGTTGATAGGTTCGATGCAATACTGCCACCTGGAACTgtaagatgga ... ctgaaaacagGGCGCAATCATGGCCGTCGGTGCATCAGAACCGACAGTTGTTGGTACAAAA
EST: gi|23357491|gb|BU645140.1|BU645140
EST:     TTGGTATGTTTGGAGTTGATAGGTTCGATGCAATACTGCCACCTGGAACT                         GGCGCAATCATGGCCGTCGGTGCATCAGAACCGACAGTTGTTGGTACAAAA
genomic: TTGGTATGTTTGGAGTTGATAGGTTCGATGCAATACTGCCACCTGGAACTgtaagatgga ... ctgaaaacagGGCGCAATCATGGCCGTCGGTGCATCAGAACCGACAGTTGTTGGTACAAAA
EST: gi|24768304|gb|CA403433.1|CA403433
EST:     TTGGTATGTTTGGAGTTGATAGGTTCGATGCAATACTGCCACCTGGAACT                         GGCGCAATCATGGCCGTCGGTGCATCAGAACCGACAGTTGTTGGTACAAAA
genomic: TTGGTATGTTTGGAGTTGATAGGTTCGATGCAATACTGCCACCTGGAACTgtaagatgga ... ctgaaaacagGGCGCAATCATGGCCGTCGGTGCATCAGAACCGACAGTTGTTGGTACAAAA
EST: gi|6448387|gb|AW181153.1|AW181153
EST:     AATACTGCCACCTGGAACT                         GGCGCAATCATGGCCGTCGGTGCATCAGAACCGACAGTTGTTGGTACAAAA
genomic: AATACTGCCACCTGGAACTgtaagatgga ... ctgaaaacagGGCGCAATCATGGCCGTCGGTGCATCAGAACCGACAGTTGTTGGTACAAAA
EST: gi|211440164|gb|FL434174.1|FL434174
EST:     TTGGTATGTTTGGAGTTGATAGGTTCGATGCAATACTGCCACCTGGAACT                         GGCGCAATCATGGCCGTCGGTGCATCAGAACCGACAGTTGTTGGTACAAAA
genomic: TTGGTATGTTTGGAGTTGATAGGTTCGATGCAATACTGCCACCTGGAACTgtaagatgga ... ctgaaaacagGGCGCAATCATGGCCGTCGGTGCATCAGAACCGACAGTTGTTGGTACAAAA
EST: gi|6022391|gb|AW067319.1|AW067319
EST:     TTGGTATGTTTGGAGTTGATAGGTTCGATGCAATACTGCCACCTGGAACT                         GGCGCAATCATGGCCGTCGGTGCATCAGAACCGACAGTTGTTGGTACAAAA
genomic: TTGGTATGTTTGGAGTTGATAGGTTCGATGCAATACTGCCACCTGGAACTgtaagatgga ... ctgaaaacagGGCGCAATCATGGCCGTCGGTGCATCAGAACCGACAGTTGTTGGTACAAAA
EST: gi|71765103|gb|DR963040.1|DR963040
EST:     TTGGTATGTTTGGAGTTGATAGGTTCGATGCAATACTGCCACCTGGAACT                         GGCGCAATCATGGCCGTCGGTGCATCAGAACCGACAGTTGTTGGTACAAAA
genomic: TTGGTATGTTTGGAGTTGATAGGTTCGATGCAATACTGCCACCTGGAACTgtaagatgga ... ctgaaaacagGGCGCAATCATGGCCGTCGGTGCATCAGAACCGACAGTTGTTGGTACAAAA
EST: gi|60344293|gb|DN211266.1|DN211266
EST:     TTGGTATGTTTGGAGTTGATAGGTTCGATGCAATACTGCCACCTGGAACT                         GGCGCAATCATGGCCGTCGGTGCATCAGAACCGACAGTTGTTGGTACAAAA
genomic: TTGGTATGTTTGGAGTTGATAGGTTCGATGCAATACTGCCACCTGGAACTgtaagatgga ... ctgaaaacagGGCGCAATCATGGCCGTCGGTGCATCAGAACCGACAGTTGTTGGTACAAAA
EST: gi|78088435|gb|DV516828.1|DV516828
EST:     TTGGTATGTTTGGAGTTGATAGGTTCGATGCAATACTGCCACCTGGAACT                         GGCGCAATCATGGCCGTCGGTGCATCAGAACCGACAGTTGTTGGTACAAAA
genomic: TTGGTATGTTTGGAGTTGATAGGTTCGATGCAATACTGCCACCTGGAACTgtaagatgga ... ctgaaaacagGGCGCAATCATGGCCGTCGGTGCATCAGAACCGACAGTTGTTGGTACAAAA
EST: gi|149027250|gb|EE046447.2|EE046447
EST:     TTGGTATGTTTGGAGTTGATAGGTTCGATGCAATACTGCCACCTGGAACT                         GGCGCAATCATGGCCGTCGGTGCATCAGAACCGACAGTTGTTGGTACAAAA
genomic: TTGGTATGTTTGGAGTTGATAGGTTCGATGCAATACTGCCACCTGGAACTgtaagatgga ... ctgaaaacagGGCGCAATCATGGCCGTCGGTGCATCAGAACCGACAGTTGTTGGTACAAAA
EST: gi|93013412|gb|EB638932.1|EB638932
EST:     TTGGTATGTTTGGAGTTGATAGGTTCGATGCAATACTGCCACCTGGAACT                         GGCGCAATCATGGCCGTCGGTGCATCAGAACCGACAGTTGTTGGTACAAAA
genomic: TTGGTATGTTTGGAGTTGATAGGTTCGATGCAATACTGCCACCTGGAACTgtaagatgga ... ctgaaaacagGGCGCAATCATGGCCGTCGGTGCATCAGAACCGACAGTTGTTGGTACAAAA
EST: gi|71444183|gb|DR825233.1|DR825233
EST:     TTGGTATGTTTGGAGTTGATAGGTTCGATGCAATACTGCCACCTGGAACT                         GGCGCAATCATGGCCGTCGGTGCATCAGACCCGACAGTTGTTGGTACAAAA
genomic: TTGGTATGTTTGGAGTTGATAGGTTCGATGCAATACTGCCACCTGGAACTgtaagatgga ... ctgaaaacagGGCGCAATCATGGCCGTCGGTGCATCAGAACCGACAGTTGTTGGTACAAAA
EST: gi|93284411|gb|EB676675.1|EB676675
EST:     TTGGTATGTTTGGAGTTGATAGGTTCGATGCAATACTGCCACCTGGAACT                         GGCGCAATCATGGCCGTCGGTGCATCAGAACCGACAGTTGTTGGTACAAAA
genomic: TTGGTATGTTTGGAGTTGATAGGTTCGATGCAATACTGCCACCTGGAACTgtaagatgga ... ctgaaaacagGGCGCAATCATGGCCGTCGGTGCATCAGAACCGACAGTTGTTGGTACAAAA
EST: gi|83279414|gb|DV943422.1|DV943422
EST:     TTGGTATGTTTGGAGTTGATAGGTTCGATGCAATACTGCCACCTGGAACT                         GGCGCAATCATGGCCGTCGGTGCATCAGAACCGACAGTTGTTGGTACAAAA
genomic: TTGGTATGTTTGGAGTTGATAGGTTCGATGCAATACTGCCACCTGGAACTgtaagatgga ... ctgaaaacagGGCGCAATCATGGCCGTCGGTGCATCAGAACCGACAGTTGTTGGTACAAAA
EST: gi|74246257|gb|DT654171.1|DT654171
EST:     TTGGTATGTTTGGAGTTGATAGGTTGGATGCAATACTGCCCCCTGGAACT                         GGGGCAATCATGGCCGTCGGTGCATCAGAACCGACAGTTGTTGGTACAAAA
genomic: TTGGTATGTTTGGAGTTGATAGGTTCGATGCAATACTGCCACCTGGAACTgtaagatgga ... ctgaaaacagGGCGCAATCATGGCCGTCGGTGCATCAGAACCGACAGTTGTTGGTACAAAA
EST: gi|78074314|gb|DV502748.1|DV502748
EST:     TTGGTATGTTTGGAGTTGATAGGTTCGATGCAATACTGCCACCTGGAACT                         GGCGCAATCATGGCCGTCGGTGCATCAGAACCGACAGTTGTTGGTACAAAA
genomic: TTGGTATGTTTGGAGTTGATAGGTTCGATGCAATACTGCCACCTGGAACTgtaagatgga ... ctgaaaacagGGCGCAATCATGGCCGTCGGTGCATCAGAACCGACAGTTGTTGGTACAAAA
EST: gi|71759734|gb|DR957671.1|DR957671
EST:     TTGGTATGTTTGGAGTTGATAGGTTCGATGCAATACTGCCACCTGGAACT                         GGCGCAATCATGGCCGTCGGTGCATCAGAACCGACAGTTGTTGGTAC-AAA
genomic: TTGGTATGTTTGGAGTTGATAGGTTCGATGCAATACTGCCACCTGGAACTgtaagatgga ... ctgaaaacagGGCGCAATCATGGCCGTCGGTGCATCAGAACCGACAGTTGTTGGTACAAAA
EST: gi|74236968|gb|DT644882.1|DT644882
EST:     TTGGTATGTTTGGAGTTGATAGGTTCGATGCAATACTGCCACCTGGAACT                         GGCGCAATCATGGCCGTCGGTGCATCAGAACCGACAGTTGTTGGTACAAAA
genomic: TTGGTATGTTTGGAGTTGATAGGTTCGATGCAATACTGCCACCTGGAACTgtaagatgga ... ctgaaaacagGGCGCAATCATGGCCGTCGGTGCATCAGAACCGACAGTTGTTGGTACAAAA
EST: gi|149035803|gb|EE155127.2|EE155127
EST:     TTGGTATGTTTGGAGTTGATAGGTTCGATGCAATACTGCCACCTGGAACT                         GGCGCAATCATGGCCGTCGGTGCATCAGAACCGACAGTTGTTGGTACAAAA
genomic: TTGGTATGTTTGGAGTTGATAGGTTCGATGCAATACTGCCACCTGGAACTgtaagatgga ... ctgaaaacagGGCGCAATCATGGCCGTCGGTGCATCAGAACCGACAGTTGTTGGTACAAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctattttaatgcaattctgcataccctactgaaatatccgggttactgaaaacagGGCGCAATCATGGCCGTCGGTGCATCAGAACCGACAGTTGTTGGTACAAAAGACGGTAGAATCGGGATCAAGAGCCAAATGCAG
   ttttaat  putative branch site (score: 3)
                             tgaaatat  TA-rich tract