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21 5' 3' |
gtaagtgtcatacctgcccataccagtacttttgcaactatttaattattcttaatctataatgcaatagctttggtattcaaaaagatgcattcttttaccagGGGCACACTGCCATCAATGAACTCATTAGGGCGCTGGTTTGGGGAGCCTGTAAGGGCTGCTATTCTGCAAACCAAT
species | Zea mays |
transcript | GRMZM2G011456_T03 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AGATTGCTATGTGACCATAGTAGCCAACTATGCGTGGCACTTGATATTTC GGGCACACTGCCEST: gi|91876145|gb|EB406102.1|EB406102
genomic: AGATTGCTATGTGACCATAGTAGCCAACTATGCGTGGCACTTGATATTTCgtaagtgtca ... cttttaccagGGGCACACTGCC
EST: AGATTGCTATGTGACCATAGTAGCCAACTATGCGTGGCACTTGATATTTC GGGCACACTGCCATCAATGAACEST: gi|71311078|gb|DR791853.1|DR791853
genomic: AGATTGCTATGTGACCATAGTAGCCAACTATGCGTGGCACTTGATATTTCgtaagtgtca ... cttttaccagGGGCACACTGCCATCAATGAAC
EST: AGATTGCTATGTGACCATAGTAGCCAACTATGCGTGGCACTTGATATTTC GGGCACACTGCCATCAATGAACTCATTAGGGCGCTGGTTTGGGGAGCCTGTEST: gi|71300983|gb|DR786520.1|DR786520
genomic: AGATTGCTATGTGACCATAGTAGCCAACTATGCGTGGCACTTGATATTTCgtaagtgtca ... cttttaccagGGGCACACTGCCATCAATGAACTCATTAGGGCGCTGGTTTGGGGAGCCTGT
EST: AGATTGCTATGTGACCATAGTAGCCAACTATGCGTGGCACTTGATATTTC GGGCACACTGCCATCAATGAACTCATTAGGGCGCTGGTTTGGGGAGCCTGTEST: gi|211230912|gb|FL222481.1|FL222481
genomic: AGATTGCTATGTGACCATAGTAGCCAACTATGCGTGGCACTTGATATTTCgtaagtgtca ... cttttaccagGGGCACACTGCCATCAATGAACTCATTAGGGCGCTGGTTTGGGGAGCCTGT
EST: AGAT-GCTATGTGACCATAGTAGCCCACTATGCGTGGCACTTGATATTTC GGGCACACTGCCATCAATGAACTCATTTAAGGCGCTGGTTTGGGGAGCCTGEST: gi|78117239|gb|DV535626.1|DV535626
genomic: AGATTGCTATGTGACCATAGTAGCCAACTATGCGTGGCACTTGATATTTCgtaagtgtca ... cttttaccagGGGCACACTGCCATCAATGAACTCATT-AGGGCGCTGGTTTGGGGAGCCTG
EST: AGATTGCTATGTGACCATAGTAGCCAACTATGCGTGGCACTTGATATTTC GGGCACACTGCCATCAATGAACTCATTANGGCGCTGGTTTGGGGAGCCTGTEST: gi|74233408|gb|DT641322.1|DT641322
genomic: AGATTGCTATGTGACCATAGTAGCCAACTATGCGTGGCACTTGATATTTCgtaagtgtca ... cttttaccagGGGCACACTGCCATCAATGAACTCATTAGGGCGCTGGTTTGGGGAGCCTGT
EST: AGATTGCTATGTGACCATAGTAGCCAACTATGCGTGGCACTTGATATTTC GGGCACACTGCCATCAATGAACTCATTAGGGCGCTGGTTTGGGGAGCCTGTEST: gi|89762829|gb|DY690269.1|DY690269
genomic: AGATTGCTATGTGACCATAGTAGCCAACTATGCGTGGCACTTGATATTTCgtaagtgtca ... cttttaccagGGGCACACTGCCATCAATGAACTCATTAGGGCGCTGGTTTGGGGAGCCTGT
EST: AGATTGCTATGTGACCATAGTAGCCAACTATGCGTGGCACTTGATATTTC GGGCACACTGCCATCAATGAACTCATT
genomic: AGATTGCTATGTGACCATAGTAGCCAACTATGCGTGGCACTTGATATTTCgtaagtgtca ... cttttaccagGGGCACACTGCCATCAATGAACTCATT
tcttaatctataatgcaatagctttggtattcaaaaagatgcattcttttaccagGGGCACACTGCCATCAATGAACTCATTAGGGCGCTGGTTTGGGGAGCCTGTAAGGGCTGCTATTCTGCAAACCAAT
tcttaat putative branch site (score: 3)
ttcttttacc putative PPT
tattcaaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtgtcatacctgcccataccagtacttttgcaactatttaattattcttaatctataatgcaatagctttggtattcaaaaagatgcattcttttaccagGGGCACACTGCCATCAATGAACTCATTAGGGCGCTGGTTTGGGGAGCCTGTAAGGGCTGCTATTCTGCAAACCAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT