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gtatccttaaactcatttatgtacctatacaattttcttcgtgagtatatgacttcaacaaccttggatgtcggccttaacaaactgtttgcagTTATTTTCTCAGTTGGTTAACTGGTTCATGTTTTTCTGTATCACACGGACTCTATCAAACAGCTTGGAGACTGTTTTGACCGTGGCTGGACTCTATTATT
species | Zea mays |
transcript | GRMZM2G000937_T02 |
intron # | 5 |
splice site | 3' |
intron type | U12 (go to U12 genes for details) |
EST: TATATAAACTTTCCAAACTTATTTTCAATGGTCAAGCTGCTAAGTGGACG TTATTTTCTCAGCTGCCTAACTGGTTCATGTTTTTCTGTATCACACGGACTEST: gi|71447078|gb|DR828128.1|DR828128
genomic: TATATAAACTTTCCAAACTTATTTTCAATGGTCAAGTTGCTAAGTGGACGgtatccttaa ... ctgtttgcagTTATTTTCTCAGTTGGTTAACTGGTTCATGTTTTTCTGTATCACACGGACT
EST: TATATAAACTTTCCAAACTTATTTTCAATGGTCAAGTTGCTAAGTGGACG TTATTTTCTCAGTTGGTTAACTGGTTCATGTTTTTCTGTATCACACGGACTEST: gi|148966855|gb|EE017969.2|EE017969
genomic: TATATAAACTTTCCAAACTTATTTTCAATGGTCAAGTTGCTAAGTGGACGgtatccttaa ... ctgtttgcagTTATTTTCTCAGTTGGTTAACTGGTTCATGTTTTTCTGTATCACACGGACT
EST: TATATAAACTTTCCAAACTTATTTTCAATGGTCAAGTTGCTAAGTGGACG TTATTTTCTCAGTTGGTTAACTGGTTCATGTTTTTCTGTATCACACGGACTEST: gi|76916624|gb|DV166470.1|DV166470
genomic: TATATAAACTTTCCAAACTTATTTTCAATGGTCAAGTTGCTAAGTGGACGgtatccttaa ... ctgtttgcagTTATTTTCTCAGTTGGTTAACTGGTTCATGTTTTTCTGTATCACACGGACT
EST: TATATAAACTTTCCAAACTTATTTTCAATGGTCAAGTTGCTAAGTGGACG TTATTTTCTCAGTTGGTTAACTGGTTCATGTTTTTCTGTATCACACGGACTEST: gi|78117459|gb|DV535846.1|DV535846
genomic: TATATAAACTTTCCAAACTTATTTTCAATGGTCAAGTTGCTAAGTGGACGgtatccttaa ... ctgtttgcagTTATTTTCTCAGTTGGTTAACTGGTTCATGTTTTTCTGTATCACACGGACT
EST: TATATAAACTTTCCAAACTTATTTTCAATGGTCAAGTTGCTAAGTGGACG TTATTTTCTCAGTTGGTTAACTGGTTCATGTTTTTCTGTATCACACGGACT
genomic: TATATAAACTTTCCAAACTTATTTTCAATGGTCAAGTTGCTAAGTGGACGgtatccttaa ... ctgtttgcagTTATTTTCTCAGTTGGTTAACTGGTTCATGTTTTTCTGTATCACACGGACT
cgtgagtatatgacttcaacaaccttggatgtcggccttaacaaactgtttgcagTTATTTTCTCAGTTGGTTAACTGGTTCATGTTTTTCTGTATCACACGGACTCTATCAAACAGCTTGGAGACTGTTTTGACCGTGGCTGGACTCTATTATT
ggccttaac putative branch site
ttaacaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatccttaaactcatttatgtacctatacaattttcttcgtgagtatatgacttcaacaaccttggatgtcggccttaacaaactgtttgcagTTATTTTCTCAGTTGGTTAACTGGTTCATGTTTTTCTGTATCACACGGACTCTATCAAACAGCTTGGAGACTGTTTTGACCGTGGCTGGACTCTATTATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA