1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaatgacatttttttcattcctttcacctgtttttgtgtgatgattttcactactcatgctctgttgcgtaattcttttcctcggcagGTCAACCCAGAATAATCCACAGGGATATAAAGTCCTCCAATATCTTGCTGGATAATAACTTTGAAGCACTG
species | Zea mays |
transcript | GRMZM5G872442_T02 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TAAAATTGCGGCTGGTTCGGCTCGTGGAATAGCCTATCTTCACGAAGATT GTCAACCCAGAATAATCCACAGGGATATAAAGTCCTCCAATATCTTGCTGGEST: gi|22520879|gb|BU079690.1|BU079690
genomic: TAAAATTGCGGCTGGTTCGGCTCGTGGAATAGCCTATCTTCACGAAGATTgtaatgacat ... tcctcggcagGTCAACCCAGAATAATCCACAGGGATATAAAGTCCTCCAATATCTTGCTGG
EST: TAAAATTGCGGCTGGTTCGGCTCGTGGAATAGCCTATCTTCACGAAGATT GTCAACCCAGAATAATCCACAGGGATATAAAGTCCTCCAATATCTTGCTGGEST: gi|71432382|gb|DR813432.1|DR813432
genomic: TAAAATTGCGGCTGGTTCGGCTCGTGGAATAGCCTATCTTCACGAAGATTgtaatgacat ... tcctcggcagGTCAACCCAGAATAATCCACAGGGATATAAAGTCCTCCAATATCTTGCTGG
EST: TAAAATTGCGGCTGGTTCGGCTCGTGGAATAGCCTATCTTCACGAAGATT GTCAACCCAGAATAATCCACAGGGATATAAAGTCCTCCAATATCTTGCTGGEST: gi|87156672|gb|DY401461.1|DY401461
genomic: TAAAATTGCGGCTGGTTCGGCTCGTGGAATAGCCTATCTTCACGAAGATTgtaatgacat ... tcctcggcagGTCAACCCAGAATAATCCACAGGGATATAAAGTCCTCCAATATCTTGCTGG
EST: TAAAATTGCGGCTGGTTCGGCTCGTGGAATAGCCTATCTTCACGAAGATT GTCAACCCAGAATAATCCACAGGGATATAAAGTCCTCCAATATCTTGCTGG
genomic: TAAAATTGCGGCTGGTTCGGCTCGTGGAATAGCCTATCTTCACGAAGATTgtaatgacat ... tcctcggcagGTCAACCCAGAATAATCCACAGGGATATAAAGTCCTCCAATATCTTGCTGG
ttgtgtgatgattttcactactcatgctctgttgcgtaattcttttcctcggcagGTCAACCCAGAATAATCCACAGGGATATAAAGTCCTCCAATATCTTGCTGGATAATAACTTTGAAGCACTG
taattcttttcctc CT-rich tract
taattctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatgacatttttttcattcctttcacctgtttttgtgtgatgattttcactactcatgctctgttgcgtaattcttttcctcggcagGTCAACCCAGAATAATCCACAGGGATATAAAGTCCTCCAATATCTTGCTGGATAATAACTTTGAAGCACTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC