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gttgctgctacttctgctttatttatgaatttcaacatgttatattctacttgcaacaagtttgggcaatgacttattctttcttctagGATTCGTATGCTATCCTCAGCAATGAACGTGGCATAGCAGCTCAGGACAGCGGTGCATTTTCTTGGGAGATTGTTCCT
species | Zea mays |
transcript | GRMZM5G860137_T02 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGTGTGCTGAATTGTGTTCAGACCAGCACTCCATCTCAAGGGAGGAGCAG GATTCGTATGCTATCCTCAGCAATGAACGTGGCEST: gi|78180536|gb|DV551029.1|DV551029
genomic: TGTGTGCTGAATTGTGTTCAGACCAGCACTCAATCTCAAGGGAGGAGCAGgttgctgcta ... tttcttctagGATTCGTATGCTATCCTCAGCAATGAACGTGGC
EST: TGTGTGCTGAATTGTGTTCAGACCAGCACTCAATCTCAAGGGAGGAGCAG GATTCGTATGCTATCCTCAGCAATGAACGTGGCATAGCAGCTCGGGACAGCEST: gi|149110543|gb|EE190473.2|EE190473
genomic: TGTGTGCTGAATTGTGTTCAGACCAGCACTCAATCTCAAGGGAGGAGCAGgttgctgcta ... tttcttctagGATTCGTATGCTATCCTCAGCAATGAACGTGGCATAGCAGCTCAGGACAGC
EST: TGTGTGCTGAATTGTGTTCAGACCAGCACTCAATCTCAAGGGAGGAGCAG GATTCGTATGCTATCCTCAGCAATGAACGTGGCATAGCAGCTCAGGACAGCEST: gi|149087112|gb|EE176651.2|EE176651
genomic: TGTGTGCTGAATTGTGTTCAGACCAGCACTCAATCTCAAGGGAGGAGCAGgttgctgcta ... tttcttctagGATTCGTATGCTATCCTCAGCAATGAACGTGGCATAGCAGCTCAGGACAGC
EST: TGTGTGCTGAATTGTGTTCAGACCAGCACTCAATCTCAAGGGAGGAGCAG GATTCGTATGCTATCCTCAGCAATGAACGTGGCATAGCAGCTCAGGACAGCEST: gi|78087866|gb|DV516259.1|DV516259
genomic: TGTGTGCTGAATTGTGTTCAGACCAGCACTCAATCTCAAGGGAGGAGCAGgttgctgcta ... tttcttctagGATTCGTATGCTATCCTCAGCAATGAACGTGGCATAGCAGCTCAGGACAGC
EST: TGTGTGCTGAATTGTGTTCAGACCAGCACTCAATCTCAAGGGAGGAGCAG GATTCGTATGCTATCCTCAGCAATGAACGTGGCATAGCAGCTCANGACAGCEST: gi|71426143|gb|DR807193.1|DR807193
genomic: TGTGTGCTGAATTGTGTTCAGACCAGCACTCAATCTCAAGGGAGGAGCAGgttgctgcta ... tttcttctagGATTCGTATGCTATCCTCAGCAATGAACGTGGCATAGCAGCTCAGGACAGC
EST: TGTGTGCTGAATTGTGTTCAGACCAGCACTCAATCTCAAGGGAGGAGCAG GATTCGTATGCTATCCTCAGCAATGAACGTGGCATAGCAGCTCAGGACAGCEST: gi|71439486|gb|DR820536.1|DR820536
genomic: TGTGTGCTGAATTGTGTTCAGACCAGCACTCAATCTCAAGGGAGGAGCAGgttgctgcta ... tttcttctagGATTCGTATGCTATCCTCAGCAATGAACGTGGCATAGCAGCTCAGGACAGC
EST: TGTGTGCTGAATTGTGTTCAGACCAGCACTCAATCTCAAGGGAGGAGCAG GATTCGTATGCTATCCTCAGCAATGAACGTGGCATAGCAGCTCAGGACAGCEST: gi|149084568|gb|EE174037.2|EE174037
genomic: TGTGTGCTGAATTGTGTTCAGACCAGCACTCAATCTCAAGGGAGGAGCAGgttgctgcta ... tttcttctagGATTCGTATGCTATCCTCAGCAATGAACGTGGCATAGCAGCTCAGGACAGC
EST: TGTGTGCTGAATTGTGTTCAGACCAGCACTCAATCTCAAGGGAGGAGCAG GATTCGTATGCTATCEST: gi|148945943|gb|EC891236.2|EC891236
genomic: TGTGTGCTGAATTGTGTTCAGACCAGCACTCAATCTCAAGGGAGGAGCAGgttgctgcta ... tttcttctagGATTCGTATGCTATC
EST: TGTGTGCTGAATTGTGTTCAGACCAGCACTCAATCTCAAGGGAGGAGCAG GATTCGTATGCTATCCTCAGCAATGAACGGGGCATAGCAGCTCAGGACAGCEST: gi|6994169|gb|AW453383.1|AW453383
genomic: TGTGTGCTGAATTGTGTTCAGACCAGCACTCAATCTCAAGGGAGGAGCAGgttgctgcta ... tttcttctagGATTCGTATGCTATCCTCAGCAATGAACGTGGCATAGCAGCTCAGGACAGC
EST: CCAGCACTCAATCTCAAGGGAGGAGCAG GATTCGTATGCTATCCTCAGCAATGAACGTGGCATAGCAGCTCGGGATAGCEST: gi|148939632|gb|EC884275.2|EC884275
genomic: CCAGCACTCAATCTCAAGGGAGGAGCAGgttgctgcta ... tttcttctagGATTCGTATGCTATCCTCAGCAATGAACGTGGCATAGCAGCTCAGGACAGC
EST: TGTGTGCTGAATTGTGTTCAGACCAGCACTCAATCTCAAGGGAGGAGCAG GATTCGTATGCTATCCTCAGCAATGAACGTGGCATAGCAGCTCAAGACAGCEST: gi|12047245|gb|BF729384.1|BF729384
genomic: TGTGTGCTGAATTGTGTTCAGACCAGCACTCAATCTCAAGGGAGGAGCAGgttgctgcta ... tttcttctagGATTCGTATGCTATCCTCAGCAATGAACGTGGCATAGCAGCTCAGGACAGC
EST: TGTGTGCTGAATTGTGTTCAGACCAGCACTCAATCTCAAGGGAGGAGCAG GATTCGTATGCTATCCTCAGCAATGAACGTGGCATAGCAGCTCGGGACAGCEST: gi|89760643|gb|DY688974.1|DY688974
genomic: TGTGTGCTGAATTGTGTTCAGACCAGCACTCAATCTCAAGGGAGGAGCAGgttgctgcta ... tttcttctagGATTCGTATGCTATCCTCAGCAATGAACGTGGCATAGCAGCTCAGGACAGC
EST: TGTGTGCTGAATTGTGTTCAGACCAGCACTCAATCTCAAGGGAGGAGCAG GATTCGTATGCTATCCTCAGCAATGAACGTGGCATAGCAGCTCAGGACAGCEST: gi|149071725|gb|EE160115.2|EE160115
genomic: TGTGTGCTGAATTGTGTTCAGACCAGCACTCAATCTCAAGGGAGGAGCAGgttgctgcta ... tttcttctagGATTCGTATGCTATCCTCAGCAATGAACGTGGCATAGCAGCTCAGGACAGC
EST: TGTGTGCTGAATTGTGTTCAGACCAGCACTCAATCTCAAGGGAGGAGCAG GATTCGTATGCTATCCTCAGCAATGAACGTGGCATAGCAGCTCAGGACAGCEST: gi|78078473|gb|DV506886.1|DV506886
genomic: TGTGTGCTGAATTGTGTTCAGACCAGCACTCAATCTCAAGGGAGGAGCAGgttgctgcta ... tttcttctagGATTCGTATGCTATCCTCAGCAATGAACGTGGCATAGCAGCTCAGGACAGC
EST: TGTGTGCTGAATTGTGTTCAGACCAGCACTCAATCTCAAGGGAGGAGCAG GATTCGTATGCTATCCTCAGCAATGAACGTGGCATAGCAGCTCANGACAGCEST: gi|149029957|gb|EE286286.2|EE286286
genomic: TGTGTGCTGAATTGTGTTCAGACCAGCACTCAATCTCAAGGGAGGAGCAGgttgctgcta ... tttcttctagGATTCGTATGCTATCCTCAGCAATGAACGTGGCATAGCAGCTCAGGACAGC
EST: TGTGTGCTGAATTGTGTTCAGACCAGCACTCAATCTCAAGGGAGGAGCAG GATTCGTATGCTATCCTCAGCAATGAACGTGGCATAGCAGCTCAGGACAGC
genomic: TGTGTGCTGAATTGTGTTCAGACCAGCACTCAATCTCAAGGGAGGAGCAGgttgctgcta ... tttcttctagGATTCGTATGCTATCCTCAGCAATGAACGTGGCATAGCAGCTCAGGACAGC
acatgttatattctacttgcaacaagtttgggcaatgacttattctttcttctagGATTCGTATGCTATCCTCAGCAATGAACGTGGCATAGCAGCTCAGGACAGCGGTGCATTTTCTTGGGAGATTGTTCCT
cttattctttcttct CT-rich tract
ttatattcta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttgctgctacttctgctttatttatgaatttcaacatgttatattctacttgcaacaagtttgggcaatgacttattctttcttctagGATTCGTATGCTATCCTCAGCAATGAACGTGGCATAGCAGCTCAGGACAGCGGTGCATTTTCTTGGGAGATTGTTCCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT