1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaacatgctcacagcacacacctgtgctgtgactgatctttcctcgctttgaacgaacaatcgaatctgtgatcggcattttgctcagactaagtatcttgttcggcagGAGGAGGATAAGGTGAGGCTGGCGGCCATGACTGGGCTGGACCCGAAGCAGATCAACAACTGGTTCATCAACCAGCGGAAGCGGCATTGGAAGCCGTCGG
species | Zea mays |
transcript | GRMZM5G832409_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CGGCGCTGATGGACTGGTGGAACACGCACTACCGCTGGCCGTACCCTACG GAGGAGGATAAGGTGAGGCTGGCGGCCATGACTGGGCTGGACCCGAAGCAGEST: gi|89763946|gb|DY690927.1|DY690927
genomic: CGGCGCTGATGGACTGGTGGAACACGCACTACCGCTGGCCGTACCCTACGgtaacatgct ... tgttcggcagGAGGAGGATAAGGTGAGGCTGGCGGCCATGACTGGGCTGGACCCGAAGCAG
EST: CGGCGCTGATGGACTGGTGGAACACGCACTACCGCTGGCCGTACCCTACG GAGGAGGATAAGGTGAGGCTGGCGGCCATGACTGGGCTGGACCCGAAGCAGEST: gi|76924531|gb|DV169993.1|DV169993
genomic: CGGCGCTGATGGACTGGTGGAACACGCACTACCGCTGGCCGTACCCTACGgtaacatgct ... tgttcggcagGAGGAGGATAAGGTGAGGCTGGCGGCCATGACTGGGCTGGACCCGAAGCAG
EST: CGGCGCTGATGGACTGGTGGAACACGCACTACCGCTGGCCGTACCCTACG GAGGAGGATAAGGTGAGGCTGGCGGCCATGACTGGGCTGGACCCGAAGCAG
genomic: CGGCGCTGATGGACTGGTGGAACACGCACTACCGCTGGCCGTACCCTACGgtaacatgct ... tgttcggcagGAGGAGGATAAGGTGAGGCTGGCGGCCATGACTGGGCTGGACCCGAAGCAG
gaacaatcgaatctgtgatcggcattttgctcagactaagtatcttgttcggcagGAGGAGGATAAGGTGAGGCTGGCGGCCATGACTGGGCTGGACCCGAAGCAGATCAACAACTGGTTCATCAACCAGCGGAAGCGGCATTGGAAGCCGTCGG
tcttgttc CT-rich tract
taagtat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacatgctcacagcacacacctgtgctgtgactgatctttcctcgctttgaacgaacaatcgaatctgtgatcggcattttgctcagactaagtatcttgttcggcagGAGGAGGATAAGGTGAGGCTGGCGGCCATGACTGGGCTGGACCCGAAGCAGATCAACAACTGGTTCATCAACCAGCGGAAGCGGCATTGGAAGCCGTCGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG