1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gttaagttttcttggactgttccgttattcttgtgatcatactgcaaaaggctaactttctgttacttttagatgggccaacagGGAGCATACAACCAAGGAATGGGTTATATGCAACCCCAG
species | Zea mays |
transcript | GRMZM5G804893_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AAAAGGATGCTCTTGGTCATGTGGGAGCAAGTAGCTCAGCTGCACAAGGG GGAGCATACAACCAAGGAATGGGTTATATGCAACCTCAGEST: gi|18172372|gb|BM347760.1|BM347760
genomic: AAAAGGATGCCCTTGGTCATGTGGGAGCAAGTAGCTCAGCTGCACAAGGGgttaagtttt ... gggccaacagGGAGCATACAACCAAGGAATGGGTTATATGCAACCCCAG
EST: AAAAGGATGCCCTTGGTCATGTGGGAGCAAGTAGCTCAGCTGCACAAGGG GGAGCATACAACCAAGGAATGGGTTATATGCAACCCCAGEST: gi|60339067|gb|DN206040.1|DN206040
genomic: AAAAGGATGCCCTTGGTCATGTGGGAGCAAGTAGCTCAGCTGCACAAGGGgttaagtttt ... gggccaacagGGAGCATACAACCAAGGAATGGGTTATATGCAACCCCAG
EST: AAAAGGATGCCCTTGGTCATGTGGGAGCAAGTAGCTCAGCTGCACAAGGG GGAGCATACAACCAAGGAATGGGTTATATGCAACCCCAGEST: gi|26559930|gb|CA832165.1|CA832165
genomic: AAAAGGATGCCCTTGGTCATGTGGGAGCAAGTAGCTCAGCTGCACAAGGGgttaagtttt ... gggccaacagGGAGCATACAACCAAGGAATGGGTTATATGCAACCCCAG
EST: AAAAGGATGCTCTTGGTCATGTGGGAGCAAGTAGCTCAGCTGCACAAGGG GGAGCATACAACCAAGGAATGGGTTATATGCAACCTCAG
genomic: AAAAGGATGCCCTTGGTCATGTGGGAGCAAGTAGCTCAGCTGCACAAGGGgttaagtttt ... gggccaacagGGAGCATACAACCAAGGAATGGGTTATATGCAACCCCAG
cttgtgatcatactgcaaaaggctaactttctgttacttttagatgggccaacagGGAGCATACAACCAAGGAATGGGTTATATGCAACCCCAG
ggctaac putative branch site (score: 23)
ttactttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttaagttttcttggactgttccgttattcttgtgatcatactgcaaaaggctaactttctgttacttttagatgggccaacagGGAGCATACAACCAAGGAATGGGTTATATGCAACCCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA