1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...gttgttcttttatggagaaacagtttctcatttagagcgcaaatgattgttgaatccactacttgatgtgaaacagtaatgcatacttcatgaaatacagATTACAGACTTGTCGTTCTCTATTTATTCAACTTTTGTTATAGAGGCTCGACATGGTTTTAACAAG
species | Zea mays |
transcript | GRMZM2G702159_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGATAATACACACCCTTGCATTCTTAGCTGGTGCCATGGTTTGGTCAAAG ATTACAGACTTGTCGTTCTCTATTTATTCAACTTTTGTTATAGAGGCTCGAEST: gi|40286942|gb|CK327334.1|CK327334
genomic: AGATAATACACACCCTTGCATTCTTAGCTGGTGCCATGGTTTGGTCAAAGgtactaataa ... tgaaatacagATTACAGACTTGTCGTTCTCTATTTATTCAACTTTTGTTATAGAGGCTCGA
EST: AGATAATACACACCCTTGCATTCTTAGCTGGTGCCATGGTTTGGTCGAAG ATTACAGACTTGTCGTTCTCTATTTATTCAACTTTTGGTTATAGAGGCTCGEST: gi|40286924|gb|CK327316.1|CK327316
genomic: AGATAATACACACCCTTGCATTCTTAGCTGGTGCCATGGTTTGGTCAAAGgtactaataa ... tgaaatacagATTACAGACTTGTCGTTCTCTATTTATTCAACTTTTG-TTATAGAGGCTCG
EST: AGATAATACACACCCTTGCATTCTTAGCTGGTGCCATGGTTTGGTCAAAG ATTACAGACTTGCCGTTCTCTATTTATTCAACTTTTGTTATAGAGGCTCGAEST: gi|91875692|gb|EB405649.1|EB405649
genomic: AGATAATACACACCCTTGCATTCTTAGCTGGTGCCATGGTTTGGTCAAAGgtactaataa ... tgaaatacagATTACAGACTTGTCGTTCTCTATTTATTCAACTTTTGTTATAGAGGCTCGA
EST: AGATAATACACACCCTTGCATTCTTAGCTGGTGCCATGGTTTGGTCAAAG ATTACAGACTTGTCGTTCTCTATTTATTCAACTTTTGTTATAGAGGCTCGAEST: gi|34391316|gb|CF384544.1|CF384544
genomic: AGATAATACACACCCTTGCATTCTTAGCTGGTGCCATGGTTTGGTCAAAGgtactaataa ... tgaaatacagATTACAGACTTGTCGTTCTCTATTTATTCAACTTTTGTTATAGAGGCTCGA
EST: AGATAATACGCACCCTTGCATTCTTAGCTGGTGCCATGGTTTGGTCAAAG ATTACAGACTTGTCGTTCTCTATTTATTCAACTTTTGTTATAGAGGCTCGAEST: gi|211077181|gb|FL069427.1|FL069427
genomic: AGATAATACACACCCTTGCATTCTTAGCTGGTGCCATGGTTTGGTCAAAGgtactaataa ... tgaaatacagATTACAGACTTGTCGTTCTCTATTTATTCAACTTTTGTTATAGAGGCTCGA
EST: ACATAATACACACCCTTGCATTCTTAGCTGGTGCCATGGTTTGGTCAA-G ATTACAGACTTGTCGGTCTCTATTTATTCAACTTTTGTTATAGAGGCTCGAEST: gi|211074451|gb|FL069426.1|FL069426
genomic: AGATAATACACACCCTTGCATTCTTAGCTGGTGCCATGGTTTGGTCAAAGgtactaataa ... tgaaatacagATTACAGACTTGTCGTTCTCTATTTATTCAACTTTTGTTATAGAGGCTCGA
EST: AGATAATACACACCCTTGCATTCTTAGCTGGTGCCATGGTTTGGTCAAAG ATTACAGACTTGTCGTTCTCTATTTATTCAACEST: gi|101394395|gb|EB819132.1|EB819132
genomic: AGATAATACACACCCTTGCATTCTTAGCTGGTGCCATGGTTTGGTCAAAGgtactaataa ... tgaaatacagATTACAGACTTGTCGTTCTCTATTTATTCAAC
EST: AGATAATACACACCCTTGCATTCTTAGCTGGTGCCATGGTTTGGTCAAAG ATTACAGACTTGTCGTTCTCTATTTATTCAACTTTTGTTATAGAGGCTCGA
genomic: AGATAATACACACCCTTGCATTCTTAGCTGGTGCCATGGTTTGGTCAAAGgtactaataa ... tgaaatacagATTACAGACTTGTCGTTCTCTATTTATTCAACTTTTGTTATAGAGGCTCGA
attgttgaatccactacttgatgtgaaacagtaatgcatacttcatgaaatacagATTACAGACTTGTCGTTCTCTATTTATTCAACTTTTGTTATAGAGGCTCGACATGGTTTTAACAAG
acttgat putative branch site (score: 3)
atgaaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttgttcttttatggagaaacagtttctcatttagagcgcaaatgattgttgaatccactacttgatgtgaaacagtaatgcatacttcatgaaatacagATTACAGACTTGTCGTTCTCTATTTATTCAACTTTTGTTATAGAGGCTCGACATGGTTTTAACAAG
- - - - - - - gagaaaca
- - - - - - - - - - - - - - - - - - - gcaaatg
- - - - - - - - - - - - - - - - - - - - - - - -tgttgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - -ccactac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgatgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcatac