1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...aataaagtattttccttcacttgccattctgggtagattgcaatccaaataaggaagcatgttggtactaacaattttcccctctttttaattataacagGTCTTCCCCAAAGCGAATTGAAGGTCCAGATGGAAGAGCTCTGCAACTCCAATTCCGGACAAGGCTGTCACTTCCCCTTTTCACCGGAGGAAAAGTTGAA
species | Zea mays |
transcript | GRMZM2G451882_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GAAGTGGAGCGCGCACTGGGCAGACTTGGCCCTGCAACAATCGGGGGAAG GTCTTCCCCAAAGCGAATTGAAGGTCCAGATGGAAGAGCTCTGCAACTCCAEST: gi|148941980|gb|EC886967.2|EC886967
genomic: GAAGTGGAGCGCGCACTGGGCAGACTTGGCCCTGCAACAATCGGGGGAAGgtatgcatgt ... attataacagGTCTTCCCCAAAGCGAATTGAAGGTCCAGATGGAAGAGCTCTGCAACTCCA
EST: GAAGTGGAGCGCGCACTGGGCAGACTTGGCCCTGCAACAATCGGGGGAAG GTCTTCCCCAAAGCGAATTGAAGGTCCAGATGGAAGAGCTCTGCAACTCCAEST: gi|211079522|gb|FL055834.1|FL055834
genomic: GAAGTGGAGCGCGCACTGGGCAGACTTGGCCCTGCAACAATCGGGGGAAGgtatgcatgt ... attataacagGTCTTCCCCAAAGCGAATTGAAGGTCCAGATGGAAGAGCTCTGCAACTCCA
EST: GAAGTGGAGCGCGCACTGGGCAGACTTGGCCCTGCAACAATCGGGGGAAG GTCTTCCCCAAAGCGAATTGAAGGTCCAGATGGAAGAGCTCTGCAACTCCAEST: gi|149013593|gb|EE043063.2|EE043063
genomic: GAAGTGGAGCGCGCACTGGGCAGACTTGGCCCTGCAACAATCGGGGGAAGgtatgcatgt ... attataacagGTCTTCCCCAAAGCGAATTGAAGGTCCAGATGGAAGAGCTCTGCAACTCCA
EST: GAAGTGGAGCGCGCACTGGGCAGACTTGGCCCTGCAACAATCGGGGGAAG GTCTTCCCCAAAGCGAATTGAAGGTCCAGATGGAAGAGCTCTGCAACTCCAEST: gi|211076795|gb|FL055832.1|FL055832
genomic: GAAGTGGAGCGCGCACTGGGCAGACTTGGCCCTGCAACAATCGGGGGAAGgtatgcatgt ... attataacagGTCTTCCCCAAAGCGAATTGAAGGTCCAGATGGAAGAGCTCTGCAACTCCA
EST: GAAGTGGGGCGCGCACTGGGCAGACTTGGCCCTGCAACAATCGGGGGAAG GTCTTCCCCAAAGCGAATTGAAGGTCCAGATGGAAGAGCTCTGCAACTCCAEST: gi|71771244|gb|DR969181.1|DR969181
genomic: GAAGTGGAGCGCGCACTGGGCAGACTTGGCCCTGCAACAATCGGGGGAAGgtatgcatgt ... attataacagGTCTTCCCCAAAGCGAATTGAAGGTCCAGATGGAAGAGCTCTGCAACTCCA
EST: GAAGTGGAGCGCGCACTGGGCAGACTTGGCCCTGCAACAATCGGGGGAAG GTCTTCCCCAAAGCGAATTGAAGGTCCAGATGGAAGAGCTCTGCAACTCCA
genomic: GAAGTGGAGCGCGCACTGGGCAGACTTGGCCCTGCAACAATCGGGGGAAGgtatgcatgt ... attataacagGTCTTCCCCAAAGCGAATTGAAGGTCCAGATGGAAGAGCTCTGCAACTCCA
caaataaggaagcatgttggtactaacaattttcccctctttttaattataacagGTCTTCCCCAAAGCGAATTGAAGGTCCAGATGGAAGAGCTCTGCAACTCCAATTCCGGACAAGGCTGTCACTTCCCCTTTTCACCGGAGGAAAAGTTGAA
ttttcccctcttttta CT-rich tract
tctttttaattataac TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aataaagtattttccttcacttgccattctgggtagattgcaatccaaataaggaagcatgttggtactaacaattttcccctctttttaattataacagGTCTTCCCCAAAGCGAATTGAAGGTCCAGATGGAAGAGCTCTGCAACTCCAATTCCGGACAAGGCTGTCACTTCCCCTTTTCACCGGAGGAAAAGTTGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - -ccttcac
- - - - - - - - - - - gccattc
- - - - - - - - - - - - - - - - - - - - - - ccaaataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttggt