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gtaaaattcaatctttaactagtgtacagattttgaatggtatcccttttcatgtactgaactgtgtttaatgggcatttgaccaatgctagGTAGCTGGAGATCCTGGCAAAATTGCTGCAGTGCAGAGGAATCTATGGAAATTTGGAATCAAAGAAATTTGCAGGACAGGAAAA
species | Zea mays |
transcript | GRMZM2G407044_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TTTTCAGAGCAAAAGTTGTTGATATATCTGAGAAAACACTTACCATGGAG GTAGCTGGAGATCCTGGCAAAATTGCTGCAGTGCAGAGGAATCTATGGAAAEST: gi|33098451|gb|CF058411.1|CF058411
genomic: TTTTCAGAGCAAAAGTTGTTGATATATCTGAGAAAACACTTACCATGGAGgtaaaattca ... ccaatgctagGTAGCTGGAGATCCTGGCAAAATTGCTGCAGTGCAGAGGAATCTATGGAAA
EST: TTTTCAGAGCAAAAGTTGTTGATATATCTGAGAAAACACTTACCATGGAG GTAGCTGGAGATCCTGGCAAAATTGCTGCAGTGCAGAGGAGTCTATGGAAAEST: gi|149075260|gb|EE163764.2|EE163764
genomic: TTTTCAGAGCAAAAGTTGTTGATATATCTGAGAAAACACTTACCATGGAGgtaaaattca ... ccaatgctagGTAGCTGGAGATCCTGGCAAAATTGCTGCAGTGCAGAGGAATCTATGGAAA
EST: TTTTCAGAGCAAAAGTTGTTGATATATCTGAGAAAACACTTACCATGGAG GTAGCTGGAGATCCTGGCAAAATTGCTGCAGTGCAGAGGAATCTATGGAAAEST: gi|78122764|gb|DV541148.1|DV541148
genomic: TTTTCAGAGCAAAAGTTGTTGATATATCTGAGAAAACACTTACCATGGAGgtaaaattca ... ccaatgctagGTAGCTGGAGATCCTGGCAAAATTGCTGCAGTGCAGAGGAATCTATGGAAA
EST: TTTTCAGAGCAAAAGTTGTTGATATATCTGAAAAAACACTTACCATGGAG GTAGCTGGAGATCCTGGCAAAATTGCTGCAGTGCAGAGGAATCTATGGAAAEST: gi|148949305|gb|EC894756.2|EC894756
genomic: TTTTCAGAGCAAAAGTTGTTGATATATCTGAGAAAACACTTACCATGGAGgtaaaattca ... ccaatgctagGTAGCTGGAGATCCTGGCAAAATTGCTGCAGTGCAGAGGAATCTATGGAAA
EST: TTTTCAGAGCAAAAGTTGTTGATATATCTGAGAAAACACTTACCATGGAG GTAGCTGGAGATCCTGGCAAAATTGCTGCAGTGCAGAGGAATCTATGGAAAEST: gi|71435773|gb|DR816823.1|DR816823
genomic: TTTTCAGAGCAAAAGTTGTTGATATATCTGAGAAAACACTTACCATGGAGgtaaaattca ... ccaatgctagGTAGCTGGAGATCCTGGCAAAATTGCTGCAGTGCAGAGGAATCTATGGAAA
EST: TTTTCAGAGCAAAAGTTGTTGATATATCTGAGAAAACACTTACCATGGAG GTAGCTGGAGATCCTGGCAAAATTGCTGCAGTGCAGAGGAATCTATGGAAAEST: gi|149087824|gb|EE177122.2|EE177122
genomic: TTTTCAGAGCAAAAGTTGTTGATATATCTGAGAAAACACTTACCATGGAGgtaaaattca ... ccaatgctagGTAGCTGGAGATCCTGGCAAAATTGCTGCAGTGCAGAGGAATCTATGGAAA
EST: TTTTCAGAGCAAAAGTTGTTGATATATCTGAGAAAACACTTACCATGGAG GTAGCTGGAGATCCTGGCAAAATTGCTGCAGTGCAGAGGAATCTATGGAAA
genomic: TTTTCAGAGCAAAAGTTGTTGATATATCTGAGAAAACACTTACCATGGAGgtaaaattca ... ccaatgctagGTAGCTGGAGATCCTGGCAAAATTGCTGCAGTGCAGAGGAATCTATGGAAA
tggtatcccttttcatgtactgaactgtgtttaatgggcatttgaccaatgctagGTAGCTGGAGATCCTGGCAAAATTGCTGCAGTGCAGAGGAATCTATGGAAATTTGGAATCAAAGAAATTTGCAGGACAGGAAAA
atttgac putative branch site (score: 331)
tgtttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaaattcaatctttaactagtgtacagattttgaatggtatcccttttcatgtactgaactgtgtttaatgggcatttgaccaatgctagGTAGCTGGAGATCCTGGCAAAATTGCTGCAGTGCAGAGGAATCTATGGAAATTTGGAATCAAAGAAATTTGCAGGACAGGAAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA