1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tttcactggggcatttacacttcatctaggaacattccgttctggcctcccaactgataccatttgctgtgactctgatcatgaactccatctctaacagGCTGAAGTGCGTGCCTTCTTCGATGTGCATGACCAAGAAGGAAGCCACCCTGGGGGCGTCCACCTTGAAATGACTGGGCAGAATGTGACCGAGTGCATCG
species | Zea mays |
transcript | GRMZM2G365160_T02 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GACTCGTCCATTTGACTCCATTCTG GCTGAAGTGCGTGCCTTCTTCGATGTGCATGACCAAGAAGGAAGCCACCCTEST: gi|32840706|gb|CD980387.1|CD980387
genomic: GACTCGTCCATTTGACTCCATTCTGgtgagtcacg ... tctctaacagGCTGAAGTGCGTGCCTTCTTCGATGTGCATGACCAAGAAGGAAGCCACCCT
EST: CCATCAAGGCCCCTTGTGGCCTGAAGACTCGTCCATTTGACTCCATTCTG GCTGAAGTGCGTGCCTTCTTCGATGTGCATGEST: gi|78025844|gb|DV494231.1|DV494231
genomic: CCATCAAGGCCCCTTGTGGCCTGAAGACTCGTCCATTTGACTCCATTCTGgtgagtcacg ... tctctaacagGCTGAAGTGCGTGCCTTCTTCGATGTGCATG
EST: CCATCAAGGCCCTTTGTGGCCTGAAGACTCGTCCATTTGACTCCATTCTG GCTGAAGTGCGTGCCTTCTTCGATGTGCATGACCAAGAAGGAAGCCACCCTEST: gi|211371610|gb|FK948449.1|FK948449
genomic: CCATCAAGGCCCCTTGTGGCCTGAAGACTCGTCCATTTGACTCCATTCTGgtgagtcacg ... tctctaacagGCTGAAGTGCGTGCCTTCTTCGATGTGCATGACCAAGAAGGAAGCCACCCT
EST: CCATCAAGGCCCCTTGTGGCCTGAAGACTCGTCCATTTGACTCCATTCTG GCTGAAGTGCGTGCCTTCTTCGATGTGCATGACCAAGAAGGAAGCCACCCTEST: gi|38568918|gb|CF974803.1|CF974803
genomic: CCATCAAGGCCCCTTGTGGCCTGAAGACTCGTCCATTTGACTCCATTCTGgtgagtcacg ... tctctaacagGCTGAAGTGCGTGCCTTCTTCGATGTGCATGACCAAGAAGGAAGCCACCCT
EST: CCATCAAGGCCCCTTGTGGCCTGAAGACTCGTCCATTTGACTCCATTCTG GCTGAAGTGCGTGCCTTCTTCGATGTGCATGACCAAGAAGGAAGCCACCCTEST: gi|211371609|gb|FK948448.1|FK948448
genomic: CCATCAAGGCCCCTTGTGGCCTGAAGACTCGTCCATTTGACTCCATTCTGgtgagtcacg ... tctctaacagGCTGAAGTGCGTGCCTTCTTCGATGTGCATGACCAAGAAGGAAGCCACCCT
EST: CCATCAAGGCCCCTTGTGGCCTGAAGACTCGTCCATTTGACTCCATTCTG GCTGAAGTGCGTGCCTTCTTCGATGTGCATGACCAAGAAGGAAGCCACCCTEST: gi|71533870|gb|DR784629.1|DR784629
genomic: CCATCAAGGCCCCTTGTGGCCTGAAGACTCGTCCATTTGACTCCATTCTGgtgagtcacg ... tctctaacagGCTGAAGTGCGTGCCTTCTTCGATGTGCATGACCAAGAAGGAAGCCACCCT
EST: CCATCAAGGCCCCTTGTGGCCTGAAGACTCGTCCATTTGACTCCATTCTG GCTGAAGTGCGTGCCTTCTTCGATGTGCATGACCAAGAAGGAAGCCACCCTEST: gi|38568956|gb|CF974841.1|CF974841
genomic: CCATCAAGGCCCCTTGTGGCCTGAAGACTCGTCCATTTGACTCCATTCTGgtgagtcacg ... tctctaacagGCTGAAGTGCGTGCCTTCTTCGATGTGCATGACCAAGAAGGAAGCCACCCT
EST: CCATCAAGGCCCCTTGTGGCCTGAAGACTCGTCCATTTGACTCCATTCTG GCTGAAGTGCGTGCCTTCTTCGEST: gi|40287021|gb|CK327413.1|CK327413
genomic: CCATCAAGGCCCCTTGTGGCCTGAAGACTCGTCCATTTGACTCCATTCTGgtgagtcacg ... tctctaacagGCTGAAGTGCGTGCCTTCTTCG
EST: CCATCAAGGCCCCTTGTGGCCTGAAGACTCGTCCATTTGACTCCATTCTG GCTGAAGTGCGTGCCTTCTTCGATGTGCATGACCAAGAAGGAAGCCACCCTEST: gi|71449372|gb|DR830422.1|DR830422
genomic: CCATCAAGGCCCCTTGTGGCCTGAAGACTCGTCCATTTGACTCCATTCTGgtgagtcacg ... tctctaacagGCTGAAGTGCGTGCCTTCTTCGATGTGCATGACCAAGAAGGAAGCCACCCT
EST: CCATCAAGGCCCCTTGTGGCCTGAAGACTCGTCCATTTGACTCCATTCTG GCTGAAGTGCGTGCCTTCTTCGATGTGCATGACCAAGAAGGAAGCCACCCTEST: gi|23357722|gb|BU645371.1|BU645371
genomic: CCATCAAGGCCCCTTGTGGCCTGAAGACTCGTCCATTTGACTCCATTCTGgtgagtcacg ... tctctaacagGCTGAAGTGCGTGCCTTCTTCGATGTGCATGACCAAGAAGGAAGCCACCCT
EST: CCATCAAGGCCCCTTGTGGCCTGAAGACTCGTCCATTTGACTCCATTCTG GCTGAAGTGCGTGCCTTCTTCGATGTGCATGACCAAGAAGGAAGCCACCCTEST: gi|32841201|gb|CD980882.1|CD980882
genomic: CCATCAAGGCCCCTTGTGGCCTGAAGACTCGTCCATTTGACTCCATTCTGgtgagtcacg ... tctctaacagGCTGAAGTGCGTGCCTTCTTCGATGTGCATGACCAAGAAGGAAGCCACCCT
EST: CCATCAAGGCCCCTTGTGGCCTGAAGACTCGTCCATTTGACTCCATTCTG GCTGAAGTGCGTGCCTTCTTCGATGTGCATGEST: gi|166488930|gb|EG318091.1|EG318091
genomic: CCATCAAGGCCCCTTGTGGCCTGAAGACTCGTCCATTTGACTCCATTCTGgtgagtcacg ... tctctaacagGCTGAAGTGCGTGCCTTCTTCGATGTGCATG
EST: CCATCAAGGCCCCTTGTGGCCTGAAGACTCGTCCATTTGACTCCATTCTG GCTGAAGTGCGTGCCEST: gi|211371608|gb|FK948447.1|FK948447
genomic: CCATCAAGGCCCCTTGTGGCCTGAAGACTCGTCCATTTGACTCCATTCTGgtgagtcacg ... tctctaacagGCTGAAGTGCGTGCC
EST: CCATCAAGGCCCCTTGTGGCCTGAAGACTCGTCCATTTGACTCCATTCTG GCTGAAGTGCGTGCCTTCTTCGATGTGCATGACCAAGAAGGAAGCCACCCTEST: gi|71533894|gb|DR784653.1|DR784653
genomic: CCATCAAGGCCCCTTGTGGCCTGAAGACTCGTCCATTTGACTCCATTCTGgtgagtcacg ... tctctaacagGCTGAAGTGCGTGCCTTCTTCGATGTGCATGACCAAGAAGGAAGCCACCCT
EST: CCATCAAGGCCCCTTGTGGCCTGAAGACTCGTCCATTTGACTCCATTCTG GCTGAAGTGCGTGCCTTCTTCGATGTGCATGACCAAGAAGGAAGCCACCCTEST: gi|78025351|gb|DV493738.1|DV493738
genomic: CCATCAAGGCCCCTTGTGGCCTGAAGACTCGTCCATTTGACTCCATTCTGgtgagtcacg ... tctctaacagGCTGAAGTGCGTGCCTTCTTCGATGTGCATGACCAAGAAGGAAGCCACCCT
EST: CCATCAAGGCCCCTTGTGGCCTGAAGACTCGTCCATTTGACTCCATTCTG GCTGAAGTGCGTGCCTTCTTCGATGTGCATGACCAAGAAGGAAGCCACCCTEST: gi|32866392|gb|CF006074.1|CF006074
genomic: CCATCAAGGCCCCTTGTGGCCTGAAGACTCGTCCATTTGACTCCATTCTGgtgagtcacg ... tctctaacagGCTGAAGTGCGTGCCTTCTTCGATGTGCATGACCAAGAAGGAAGCCACCCT
EST: CCATCAAGGCCCCTTGTGGCCTGAAGACTCGTCCATTTGACTCCATTCTG GCTGAAGTGCGTGCCTTCTTCGATGTGCATGACCAAGAAGGAAGCCACCCTEST: gi|32866393|gb|CF006075.1|CF006075
genomic: CCATCAAGGCCCCTTGTGGCCTGAAGACTCGTCCATTTGACTCCATTCTGgtgagtcacg ... tctctaacagGCTGAAGTGCGTGCCTTCTTCGATGTGCATGACCAAGAAGGAAGCCACCCT
EST: CCATCAAGGCCCCTTGTGGCCTGAAGACTCGTCCATTTGACTCCATTCTG GCTGAAGTGCGTGCCTTCTTCGATGTGCATGACCAAGAAGGAAGCCACCCTEST: gi|32840781|gb|CD980462.1|CD980462
genomic: CCATCAAGGCCCCTTGTGGCCTGAAGACTCGTCCATTTGACTCCATTCTGgtgagtcacg ... tctctaacagGCTGAAGTGCGTGCCTTCTTCGATGTGCATGACCAAGAAGGAAGCCACCCT
EST: CCATCAAGGCCCCTTGTGGCCTGAAGACTCGTCCATTTGACTCCATTCTG GCTGAAGTGCGTGCCTTCTTCGATGTGCATGAEST: gi|32840917|gb|CD980598.1|CD980598
genomic: CCATCAAGGCCCCTTGTGGCCTGAAGACTCGTCCATTTGACTCCATTCTGgtgagtcacg ... tctctaacagGCTGAAGTGCGTGCCTTCTTCGATGTGCATGA
EST: CCATCAAGGCCCCTTGTGGCCTGAAGACTCGTCCATTTGACTCCATTCTG GCTGAAGTGCGTGCCTTCTTCGATGTGCATGAC
genomic: CCATCAAGGCCCCTTGTGGCCTGAAGACTCGTCCATTTGACTCCATTCTGgtgagtcacg ... tctctaacagGCTGAAGTGCGTGCCTTCTTCGATGTGCATGAC
cctcccaactgataccatttgctgtgactctgatcatgaactccatctctaacagGCTGAAGTGCGTGCCTTCTTCGATGTGCATGACCAAGAAGGAAGCCACCCTGGGGGCGTCCACCTTGAAATGACTGGGCAGAATGTGACCGAGTGCATCG
ctccatctct CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttcactggggcatttacacttcatctaggaacattccgttctggcctcccaactgataccatttgctgtgactctgatcatgaactccatctctaacagGCTGAAGTGCGTGCCTTCTTCGATGTGCATGACCAAGAAGGAAGCCACCCTGGGGGCGTCCACCTTGAAATGACTGGGCAGAATGTGACCGAGTGCATCG
-ttcactg
- - - - - - - - - -cttcatc
- - - - - - - - - - - - - - - - cattccg
- - - - - - - - - - - - - - - - - - - - - - - - - - -ctgatac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttgctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgaac