1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gtcacggtgtgagtcatccatgttttgactatgttgatctgtgcaataaaatgcaattatagcttcgaaaactacagaggcctatatcatattttttcagGTCATGAATTTAATTGGCGACGTGAAAGGAAAAGTGGCTATCCTGATTGATGACATGATTGATACAGCAG
species | Zea mays |
transcript | GRMZM2G180863_T02 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CCCGTTTAGCTATTGTTGATAAAAGAAGACAGGGTCACAACATGTCAGAG GTCATGAATTTAEST: gi|60341300|gb|DN208273.1|DN208273
genomic: CCCGTTTAGCTATTGTTGATAAAAGAAGACAGGGTCACAACATGTCAGAGgtgagatctt ... attttttcagGTCATGAATTTA
EST: CCCGTTTAGCTATTGTTGATAAAAGAAGACAGGGTCACAACATGTCAGAG GTCATGAATTTAATTGGCGACGTGAAAGGAAAAGTGGCTATCCTGATTGATEST: gi|211094604|gb|FL027759.1|FL027759
genomic: CCCGTTTAGCTATTGTTGATAAAAGAAGACAGGGTCACAACATGTCAGAGgtgagatctt ... attttttcagGTCATGAATTTAATTGGCGACGTGAAAGGAAAAGTGGCTATCCTGATTGAT
EST: CCCGTTTAGCTATTGTTGATAAAAGAAGACAGGGTCACAACATGTCAGAG GTCATGAATTTAATTGGCGACGTGAAAGGAAAAGTGGCTATCCTGATTGATEST: gi|149006975|gb|EE040194.2|EE040194
genomic: CCCGTTTAGCTATTGTTGATAAAAGAAGACAGGGTCACAACATGTCAGAGgtgagatctt ... attttttcagGTCATGAATTTAATTGGCGACGTGAAAGGAAAAGTGGCTATCCTGATTGAT
EST: TCACACCATGTCAGAG GTCATGAATTTAATTGGCGACGTGAAAGGAAAAGTGGCTATCCTGATTGATEST: gi|60358780|gb|DN225753.1|DN225753
genomic: TCACAACATGTCAGAGgtgagatctt ... attttttcagGTCATGAATTTAATTGGCGACGTGAAAGGAAAAGTGGCTATCCTGATTGAT
EST: GTTGATAAAAGAAGACAGGGTCACAACATGTCAGAG GTCATGAATTTAATTGGCGACGTGAAAGGAAAAGTGGCTATCCTGATTGATEST: gi|6626351|gb|AW257883.1|AW257883
genomic: GTTGATAAAAGAAGACAGGGTCACAACATGTCAGAGgtgagatctt ... attttttcagGTCATGAATTTAATTGGCGACGTGAAAGGAAAAGTGGCTATCCTGATTGAT
EST: CCCGTTTAGCTATTGTTGATAAAAGAAGACAGGGTCACAACATGTCAGAG GTCATGAATTTAATTGGCGACGTGAAAGGAAAAGTGGCTATCCTGATTGATEST: gi|211094605|gb|FL027760.1|FL027760
genomic: CCCGTTTAGCTATTGTTGATAAAAGAAGACAGGGTCACAACATGTCAGAGgtgagatctt ... attttttcagGTCATGAATTTAATTGGCGACGTGAAAGGAAAAGTGGCTATCCTGATTGAT
EST: CCCGTTTAGCTATTGTTGATAAAAGAAGACAGGGTCACAACATGTCAGAG GTCATGAATTTAATTGGCGACGTGAAAGGAAAAGTGGCTATCCTGATTGATEST: gi|31354391|gb|CD438748.1|CD438748
genomic: CCCGTTTAGCTATTGTTGATAAAAGAAGACAGGGTCACAACATGTCAGAGgtgagatctt ... attttttcagGTCATGAATTTAATTGGCGACGTGAAAGGAAAAGTGGCTATCCTGATTGAT
EST: CCCGTTTAGCTATTGTTGATAAAAGAAGACAGGGTCACAACATGTCAGAG GTCATGAATTTAATTGGCGACGTGAAAGGAAAAGTGGCTATCCTGATTGATEST: gi|50339734|gb|CO534860.1|CO534860
genomic: CCCGTTTAGCTATTGTTGATAAAAGAAGACAGGGTCACAACATGTCAGAGgtgagatctt ... attttttcagGTCATGAATTTAATTGGCGACGTGAAAGGAAAAGTGGCTATCCTGATTGAT
EST: CCCGTTTAGCTATTGTTGATAAAAGAAGACAGGGTCACAACATGTCAGAG GTCATGAATTTAATTGGCGACGTGAAAGGAAAAGTGGCTATCCTGATTGATEST: gi|149088668|gb|EE177786.2|EE177786
genomic: CCCGTTTAGCTATTGTTGATAAAAGAAGACAGGGTCACAACATGTCAGAGgtgagatctt ... attttttcagGTCATGAATTTAATTGGCGACGTGAAAGGAAAAGTGGCTATCCTGATTGAT
EST: CCCGTTTAGCTATTGTTGATAAAAGAAGACAGGGTCACAACATGTCAGAG GTCATGAATTTAATTGGCGACEST: gi|50322471|gb|CO517597.1|CO517597
genomic: CCCGTTTAGCTATTGTTGATAAAAGAAGACAGGGTCACAACATGTCAGAGgtgagatctt ... attttttcagGTCATGAATTTAATTGGCGAC
EST: CCCGTTTAGCTATTGTTGATAAAAGAAGACAGGGTCACAACATGTCAGAG GTCATGAATTTAATTGGCGACGTGAAAGGAAAAGTGGCTATCCTGATTGAT
genomic: CCCGTTTAGCTATTGTTGATAAAAGAAGACAGGGTCACAACATGTCAGAGgtgagatctt ... attttttcagGTCATGAATTTAATTGGCGACGTGAAAGGAAAAGTGGCTATCCTGATTGAT
ataaaatgcaattatagcttcgaaaactacagaggcctatatcatattttttcagGTCATGAATTTAATTGGCGACGTGAAAGGAAAAGTGGCTATCCTGATTGATGACATGATTGATACAGCAG
tattttttc CT-rich tract
tatatcatattttttc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcacggtgtgagtcatccatgttttgactatgttgatctgtgcaataaaatgcaattatagcttcgaaaactacagaggcctatatcatattttttcagGTCATGAATTTAATTGGCGACGTGAAAGGAAAAGTGGCTATCCTGATTGATGACATGATTGATACAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - -atccatg
- - - - - - - - - - - - - - - -tgttgat
- - - - - - - - - - - - - - - - - - - - - - aataaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aactaca