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...gtaatgcttacataattacaaatgcaaagaacataattgtcagtctgtcattatcataatggttatcctcattttgtcaaccatttttctatttgctaagGTACTGGGACATTAGGCAACCCCAACCAGTGCATGTTCAGCAACTTCCTGAGCGTTGCTATGCTCTATCGCTTTGTTATCCTCTCATGGTGGTTGGCACT
species | Zea mays |
transcript | GRMZM2G180815_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GTGCCACAGATGAATCTTCTTGTCAGTGGGAGCTGGGACAAGACTTTGAG GTACTGGGACATTAGGCAACCCCAACCAGTGCATGTTCAGCAACTTCCTGAEST: gi|91878349|gb|EB408306.1|EB408306
genomic: GTGCCACAGATGAATCTTCTTGTCAGTGGGAGCTGGGACAAGACTTTGAGgtgccgaaaa ... atttgctaagGTACTGGGACATTAGGCAACCCCAACCAGTGCATGTTCAGCAACTTCCTGA
EST: GTGCCACAGATGAATCTTCTTGTCAGTGGGAGCTGGGACAAGACTTTGAG GTACTGGGACATTAAGCAACCCCAACCEST: gi|71448754|gb|DR829804.1|DR829804
genomic: GTGCCACAGATGAATCTTCTTGTCAGTGGGAGCTGGGACAAGACTTTGAGgtgccgaaaa ... atttgctaagGTACTGGGACATTAGGCAACCCCAACC
EST: GTGCCACAGATGAATCTTCTTGTCAGTGGGAGCTGGGACAAGACTTTGAG GTACTGGGACATTAGGCAACCCCAACCAGTGCATGTTCAGCAACTTCCTGAEST: gi|78073885|gb|DV502319.1|DV502319
genomic: GTGCCACAGATGAATCTTCTTGTCAGTGGGAGCTGGGACAAGACTTTGAGgtgccgaaaa ... atttgctaagGTACTGGGACATTAGGCAACCCCAACCAGTGCATGTTCAGCAACTTCCTGA
EST: GTGCCACAGATGAATCTTCTTGTCAGTGGGAGCTGGGACAAGACTTTGAG GTACTGGGACATTAGGCAACCCCAACCAGTGCATGTTCAGCAACTTCCTGAEST: gi|74235195|gb|DT643109.1|DT643109
genomic: GTGCCACAGATGAATCTTCTTGTCAGTGGGAGCTGGGACAAGACTTTGAGgtgccgaaaa ... atttgctaagGTACTGGGACATTAGGCAACCCCAACCAGTGCATGTTCAGCAACTTCCTGA
EST: GTGCCACAGATGAATCTTCTTGTCAGTGGGAGCTGGGACAAGACTTTGAG GTACTGGGACATTAGGCAACCCCAACCAGTGCATGTTCAGCAACTTCCTGAEST: gi|74234227|gb|DT642141.1|DT642141
genomic: GTGCCACAGATGAATCTTCTTGTCAGTGGGAGCTGGGACAAGACTTTGAGgtgccgaaaa ... atttgctaagGTACTGGGACATTAGGCAACCCCAACCAGTGCATGTTCAGCAACTTCCTGA
EST: GTGCCACAGATGAATCTTCTTGTCAGTGGGAGCTGGGACAAGACTTTGAG GTACTGGGACATTAGGCAACCCCAACCAGTGCATGTTCAGCAACTTCCTGAEST: gi|71432894|gb|DR813944.1|DR813944
genomic: GTGCCACAGATGAATCTTCTTGTCAGTGGGAGCTGGGACAAGACTTTGAGgtgccgaaaa ... atttgctaagGTACTGGGACATTAGGCAACCCCAACCAGTGCATGTTCAGCAACTTCCTGA
EST: GTGCCACAGATGAATCTTCTTGTCAGTGGGAGCTGGGACAAGACTTTGAG GTACTGGGACATTAGGCAACCCCAACCAGTGCATGTTCAGCAACTTCCTGAEST: gi|50332450|gb|CO527576.1|CO527576
genomic: GTGCCACAGATGAATCTTCTTGTCAGTGGGAGCTGGGACAAGACTTTGAGgtgccgaaaa ... atttgctaagGTACTGGGACATTAGGCAACCCCAACCAGTGCATGTTCAGCAACTTCCTGA
EST: GTGCCACAGATGAATCTTCTTGTCAGTGGGAGCTGGGACAAGACTTTGAG GTACTGGGACATTAGGCAACCCCAACCAGTGCATGTTCAGCAACTTCCTGAEST: gi|74240564|gb|DT648478.1|DT648478
genomic: GTGCCACAGATGAATCTTCTTGTCAGTGGGAGCTGGGACAAGACTTTGAGgtgccgaaaa ... atttgctaagGTACTGGGACATTAGGCAACCCCAACCAGTGCATGTTCAGCAACTTCCTGA
EST: GTGCCACAGATGAATCTTCTTGTCAGTGGGAGCTGGGACAAGACTTTGAG GTACTGGGACATTAGGCAACCCCAACCAGTGCATGTTCAGCAACTTCCTGAEST: gi|76930213|gb|DV172299.1|DV172299
genomic: GTGCCACAGATGAATCTTCTTGTCAGTGGGAGCTGGGACAAGACTTTGAGgtgccgaaaa ... atttgctaagGTACTGGGACATTAGGCAACCCCAACCAGTGCATGTTCAGCAACTTCCTGA
EST: GTGCCACAGATGAATCTTCTTGTCAGTGGGAGCTGGGACAAGACTTTGAG GTACTGGGACATTAGGCAACCCCAACCAGTGCATGTTCAGCAACTTCCTGA
genomic: GTGCCACAGATGAATCTTCTTGTCAGTGGGAGCTGGGACAAGACTTTGAGgtgccgaaaa ... atttgctaagGTACTGGGACATTAGGCAACCCCAACCAGTGCATGTTCAGCAACTTCCTGA
tgtcattatcataatggttatcctcattttgtcaaccatttttctatttgctaagGTACTGGGACATTAGGCAACCCCAACCAGTGCATGTTCAGCAACTTCCTGAGCGTTGCTATGCTCTATCGCTTTGTTATCCTCTCATGGTGGTTGGCACT
ccatttttctattt CT-rich tract
atttttctattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatgcttacataattacaaatgcaaagaacataattgtcagtctgtcattatcataatggttatcctcattttgtcaaccatttttctatttgctaagGTACTGGGACATTAGGCAACCCCAACCAGTGCATGTTCAGCAACTTCCTGAGCGTTGCTATGCTCTATCGCTTTGTTATCCTCTCATGGTGGTTGGCACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - tgcttac
- - - - - - - - - - aatgcaa
- - - - - - - - - - - - - - -aacataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcaacca