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gtcaggcctcatccttgctacacttagtaatttcatgctatgtttgcagtgggcttgtagtggaacagaattctacatactgtggtagttgtttcattttcagaccttatctgccttacggatcatcttatttctctgctctgaaactgtcaaaattcaaataattgtagaccttatcatattttctaattgcagGCAAGATATTGATCAGCTAGAACTTGGCAAACCCTTGCCTTTCGTGTCTGTTCATATTTCTCGTGGCTTGGTTATTCTGAAGGGTAAAACTTGCACAAGG
species | Zea mays |
transcript | GRMZM2G178822_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CATCTGTTGCTGCCCTAATTAGTTGATTTGTCTTCTGTGTACTATCTGAG GCAAGATATTGATCAGCTAGAACTTGGCAAACCCTTGCCTTTCGTGTCTGTEST: gi|211443465|gb|FL042463.1|FL042463
genomic: CATCTGTTGCTGCCCTAATTAGTTGATTTGTCTTCTGTGTACTATCTGAGgtcaggcctc ... ctaattgcagGCAAGATATTGATCAGCTAGAACTTGGCAAACCCTTGCCTTTCGTGTCTGT
EST: CATCTGTTGCTGCCCTAATTAGTTGATTTGTCTTCTGTGTACTATCTGAG GCAAGATATTGATCAGCTAGAACTTGGCAAACCCTTGCCTTTCGTGTCTGTEST: gi|211443464|gb|FL042462.1|FL042462
genomic: CATCTGTTGCTGCCCTAATTAGTTGATTTGTCTTCTGTGTACTATCTGAGgtcaggcctc ... ctaattgcagGCAAGATATTGATCAGCTAGAACTTGGCAAACCCTTGCCTTTCGTGTCTGT
EST: CATCTGTTGCTGCCCTAATTAGTTGATTTGTCTTCTGTGTACTATCTGAG GCAAGATATTGATCAGCTAGAACTTGGCAAACCCTTGCCTTTCGTGTCTGTEST: gi|211441336|gb|FL042450.1|FL042450
genomic: CATCTGTTGCTGCCCTAATTAGTTGATTTGTCTTCTGTGTACTATCTGAGgtcaggcctc ... ctaattgcagGCAAGATATTGATCAGCTAGAACTTGGCAAACCCTTGCCTTTCGTGTCTGT
EST: CATCTGTTGCTGCCCTAATTAGTTGATTTGTCTTCTGTGTACTATCTGAG GCAAGATATTGATCAGCTAGAACTTGGCAAACCCTTGCCTTTCGTGTCTGTEST: gi|211443461|gb|FL042459.1|FL042459
genomic: CATCTGTTGCTGCCCTAATTAGTTGATTTGTCTTCTGTGTACTATCTGAGgtcaggcctc ... ctaattgcagGCAAGATATTGATCAGCTAGAACTTGGCAAACCCTTGCCTTTCGTGTCTGT
EST: CATCTGTTGCTGCCCTAATTAGTTGATTTGTCTTCTGTGTACTATCTGAG GCAAGATATTGATCAGCTAGAACTTGGCAAACCCTTGCCTTTCGTGTCTGTEST: gi|211443466|gb|FL042464.1|FL042464
genomic: CATCTGTTGCTGCCCTAATTAGTTGATTTGTCTTCTGTGTACTATCTGAGgtcaggcctc ... ctaattgcagGCAAGATATTGATCAGCTAGAACTTGGCAAACCCTTGCCTTTCGTGTCTGT
EST: CATCTGTTGCTGCCCTAATTAGTTGATTTGTCTTCTGTGTACTATCTGAG GCAAGATATTGATCAGCTAGAACTTGGCAAACCCTTGCCTTTCGTGTCTGTEST: gi|211443459|gb|FL042457.1|FL042457
genomic: CATCTGTTGCTGCCCTAATTAGTTGATTTGTCTTCTGTGTACTATCTGAGgtcaggcctc ... ctaattgcagGCAAGATATTGATCAGCTAGAACTTGGCAAACCCTTGCCTTTCGTGTCTGT
EST: CATCTGTTGCTGCCCTAATTAGTTGATTTGTCTTCTGTGTACTATCTGAG GCAAGATATTGATCAGCTAGAACTTGGCAAACCCTTGCCTTTCGTGTCTGTEST: gi|211443460|gb|FL042458.1|FL042458
genomic: CATCTGTTGCTGCCCTAATTAGTTGATTTGTCTTCTGTGTACTATCTGAGgtcaggcctc ... ctaattgcagGCAAGATATTGATCAGCTAGAACTTGGCAAACCCTTGCCTTTCGTGTCTGT
EST: CATCTGTTGCTGCCCTAATTAGTTGATTTGTCTTCTGTGTACTATCTGAG GCAAGATATTGATCAGCTAGAACTTGGCAAACCCTTGCCTTTCGTGTCTGTEST: gi|211443457|gb|FL042455.1|FL042455
genomic: CATCTGTTGCTGCCCTAATTAGTTGATTTGTCTTCTGTGTACTATCTGAGgtcaggcctc ... ctaattgcagGCAAGATATTGATCAGCTAGAACTTGGCAAACCCTTGCCTTTCGTGTCTGT
EST: CATCTGTTGCTGCCCTAATTAGTTGATTTGTCTTCTGTGTACTATCTGAG GCAAGATATTGATCAGCTAGAACTTGGCAAACCCTTGCCTTTCGTGTCTGTEST: gi|211441339|gb|FL042453.1|FL042453
genomic: CATCTGTTGCTGCCCTAATTAGTTGATTTGTCTTCTGTGTACTATCTGAGgtcaggcctc ... ctaattgcagGCAAGATATTGATCAGCTAGAACTTGGCAAACCCTTGCCTTTCGTGTCTGT
EST: CATCTGTTGCTGCCCTAATTAGTTGATTTGTCTTCTGTGNACTATCTGAG GCAAGATATTGATCAGCTAGAACTTGGCAAACCCTTGCCTTTCGTGTCTGTEST: gi|211443463|gb|FL042461.1|FL042461
genomic: CATCTGTTGCTGCCCTAATTAGTTGATTTGTCTTCTGTGTACTATCTGAGgtcaggcctc ... ctaattgcagGCAAGATATTGATCAGCTAGAACTTGGCAAACCCTTGCCTTTCGTGTCTGT
EST: CATCTGTTGCTGCCCTAATTAGTTGATTTGTCTTCTGTGTACTATCTGAG GCAAGATATTGATCAGCTAGAACTTGGCAAACCCTTGCCTTTCGTGTCTGT
genomic: CATCTGTTGCTGCCCTAATTAGTTGATTTGTCTTCTGTGTACTATCTGAGgtcaggcctc ... ctaattgcagGCAAGATATTGATCAGCTAGAACTTGGCAAACCCTTGCCTTTCGTGTCTGT
ctgaaactgtcaaaattcaaataattgtagaccttatcatattttctaattgcagGCAAGATATTGATCAGCTAGAACTTGGCAAACCCTTGCCTTTCGTGTCTGTTCATATTTCTCGTGGCTTGGTTATTCTGAAGGGTAAAACTTGCACAAGG
ttctaat putative branch site (score: 230)
tattttct CT-rich tract
aaaattcaaataattg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcaggcctcatccttgctacacttagtaatttcatgctatgtttgcagtgggcttgtagtggaacagaattctacatactgtggtagttgtttcattttcagaccttatctgccttacggatcatcttatttctctgctctgaaactgtcaaaattcaaataattgtagaccttatcatattttctaattgcagGCAAGATATTGATCAGCTAGAACTTGGCAAACCCTTGCCTTTCGTGTCTGTTCATATTTCTCGTGGCTTGGTTATTCTGAAGGGTAAAACTTGCACAAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG