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...atggccttagtttcgtcgtggtattacaacatgatgatttatgtaatattgttggctggaaactgagtttacaatgactaaaaaatattctattttctagGTCCGAGCAGCGGAATATAACAATGTAAGGAGCCAGCTTACTGCAATCAACAGAAAGCAAAGTGGGAG
species | Zea mays |
transcript | GRMZM2G177912_T02 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TCGTCGGCAGCATCCAGTCGCAGGTCGCCAAGATCGAGGATGACATGAAG GTTCGAGCAGCGGAATATAACAATGTAAGGAGCCAGCTTACTGCAATCAACEST: gi|9953349|gb|BE639932.1|BE639932
genomic: TCGTCGGCAGCATCCAGTCGCAGGTCGCCAAGATCGAGGATGACATGAAGgttcgtttct ... tattttctagGTCCGAGCAGCGGAATATAACAATGTAAGGAGCCAGCTTACTGCAATCAAC
EST: TCGTCGGCAGCATCCAGTCGCAGGTCGCCAAGATCGAGGATGACATGAAG GTTCGAGCAGCAGAATATAACAATGTAAGGAGCCAGCTTACTGCAATCAACEST: gi|78120131|gb|DV538515.1|DV538515
genomic: TCGTCGGCAGCATCCAGTCGCAGGTCGCCAAGATCGAGGATGACATGAAGgttcgtttct ... tattttctagGTCCGAGCAGCGGAATATAACAATGTAAGGAGCCAGCTTACTGCAATCAAC
EST: TCGTCGGCAGCATCCAGTCGCAGGTCGCCAAGATCGAGGATGACATGAAG GTCCGAGCAGCGGAATATAACAATGTAAGGAGCCAGCTTACTGCAATCAACEST: gi|211267792|gb|FL344631.1|FL344631
genomic: TCGTCGGCAGCATCCAGTCGCAGGTCGCCAAGATCGAGGATGACATGAAGgttcgtttct ... tattttctagGTCCGAGCAGCGGAATATAACAATGTAAGGAGCCAGCTTACTGCAATCAAC
EST: TCGTCGGCAGCATCCAGTCGCAGGTCGCCAAGATCGAGGATGACATGAAG GTTCGAGCAGCGGAATATAACAATGTAAGGAGCCAGCTTACTGCAATCAACEST: gi|211217973|gb|FL307283.1|FL307283
genomic: TCGTCGGCAGCATCCAGTCGCAGGTCGCCAAGATCGAGGATGACATGAAGgttcgtttct ... tattttctagGTCCGAGCAGCGGAATATAACAATGTAAGGAGCCAGCTTACTGCAATCAAC
EST: TCGTCGGCAGCATCCAGTCGCAGGTCGCCAAGATCGAGGATGACATGAAG GTTCGAGCAGCEST: gi|71303539|gb|DR787880.1|DR787880
genomic: TCGTCGGCAGCATCCAGTCGCAGGTCGCCAAGATCGAGGATGACATGAAGgttcgtttct ... tattttctagGTCCGAGCAGC
EST: TCGTCGGCAGCATCCAGTCGCAGGTCGCCAAGATCGAGGATGACATGAAG GTCCGAGCAGCGGAATATAACCATGTAAGGAGCCAGCTTACTEST: gi|148969238|gb|EE019992.2|EE019992
genomic: TCGTCGGCAGCATCCAGTCGCAGGTCGCCAAGATCGAGGATGACATGAAGgttcgtttct ... tattttctagGTCCGAGCAGCGGAATATAACAATGTAAGGAGCCAGCTTACT
EST: TCGTCGGCAGCATCCAGTCGCAGGTCGCCAAGATCGAGGATGACATGAAG GTCCGAGCAGCGGAATATAACAATGTAAGGAGCCAGCTTACTGCAATCAACEST: gi|149104624|gb|EE290073.2|EE290073
genomic: TCGTCGGCAGCATCCAGTCGCAGGTCGCCAAGATCGAGGATGACATGAAGgttcgtttct ... tattttctagGTCCGAGCAGCGGAATATAACAATGTAAGGAGCCAGCTTACTGCAATCAAC
EST: TCGTCGGCAGCATCCAGTCGCAGGTCGCCAAGATCGAGGATGACATGAAG GTCCGAGCAGCGGAATATAACAATGTAAGGAGCCAGCTTACTGCAATCAACEST: gi|67016433|gb|CO445182.1|CO445182
genomic: TCGTCGGCAGCATCCAGTCGCAGGTCGCCAAGATCGAGGATGACATGAAGgttcgtttct ... tattttctagGTCCGAGCAGCGGAATATAACAATGTAAGGAGCCAGCTTACTGCAATCAAC
EST: TCGTCGGCAGCATCCAGTCGCAGGTCGCCAAGATCGAGGATGACATGAAG GTTCGAGCAGCGGAATATAACAATGTAAGGAGCCAGCTTACTGCAATCAACEST: gi|211460898|gb|FL364621.1|FL364621
genomic: TCGTCGGCAGCATCCAGTCGCAGGTCGCCAAGATCGAGGATGACATGAAGgttcgtttct ... tattttctagGTCCGAGCAGCGGAATATAACAATGTAAGGAGCCAGCTTACTGCAATCAAC
EST: TCGTCGGCAGCATCCAGTCGCAGGTCGCCAAGATCGAGGATGACATGAAG GTTCGAGCAGCGGAATATAACAATGTAAGGAGCCAGCTTACTGCAATCAACEST: gi|211078718|gb|FL360383.1|FL360383
genomic: TCGTCGGCAGCATCCAGTCGCAGGTCGCCAAGATCGAGGATGACATGAAGgttcgtttct ... tattttctagGTCCGAGCAGCGGAATATAACAATGTAAGGAGCCAGCTTACTGCAATCAAC
EST: TCGTCGGCAGCATCCAGTCGCAGGTCGCCAAGATCGAGGATGACATGAAG GTTCGAGCAGCGGAATATAACAATGTAAGGAGCCAGCTTACTGCEST: gi|76288290|gb|DV027858.1|DV027858
genomic: TCGTCGGCAGCATCCAGTCGCAGGTCGCCAAGATCGAGGATGACATGAAGgttcgtttct ... tattttctagGTCCGAGCAGCGGAATATAACAATGTAAGGAGCCAGCTTACTGC
EST: TCGTCGGCAGCATCCAGTCGCAGGTCGCCAAGATCGAGGATGACATGAAG GTCCGAGCAGCGGAATATAACAATGTAAGGAGCCAGCTTACTGCAATCAAC
genomic: TCGTCGGCAGCATCCAGTCGCAGGTCGCCAAGATCGAGGATGACATGAAGgttcgtttct ... tattttctagGTCCGAGCAGCGGAATATAACAATGTAAGGAGCCAGCTTACTGCAATCAAC
atattgttggctggaaactgagtttacaatgactaaaaaatattctattttctagGTCCGAGCAGCGGAATATAACAATGTAAGGAGCCAGCTTACTGCAATCAACAGAAAGCAAAGTGGGAG
gactaaa putative branch site (score: 2)
ttctattttct putative PPT
tttacaatgactaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atggccttagtttcgtcgtggtattacaacatgatgatttatgtaatattgttggctggaaactgagtttacaatgactaaaaaatattctattttctagGTCCGAGCAGCGGAATATAACAATGTAAGGAGCCAGCTTACTGCAATCAACAGAAAGCAAAGTGGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG