1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ggtaatacaagttctcacacttaaatttggaccttctagccacacaaataatagtgcatttaccaagtgctaacattagtgatgaacttgctttctgcagCAGCACAGCAGCAGCTGATTGAGTATGAAAAGAAGCTTTTTGGTTCTAATGATGGCAGCATACCAGCTCAACCTTTTGCTCCAGTGGATTCGCTCCCTTC
species | Zea mays |
transcript | GRMZM2G174170_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ATCTTTTCAGTGGGTGAAAGAGCGGAGACCACAAGTGCAACTGTCTGATG CAGCACAGCAGCAGCTGATTGAGTATGAAAAGAAGCTTTTTGGTTCTAATGEST: gi|71299488|gb|DR785755.1|DR785755
genomic: ATCTTTTCAGTGGGTGAAAGAGCGGAGACCACAAGTGCAACTGTCTGATGgtaacttcat ... ctttctgcagCAGCACAGCAGCAGCTGATTGAGTATGAAAAGAAGCTTTTTGGTTCTAATG
EST: ATCTTTTCAGTGGGTGAAAGAGCGGAGACCACAAGTGCAACTGTCTGATG CAGCACAGCAGCAGCTGATTGAGTATGAAAAGAAGCTTTTTGGTTCTAATGEST: gi|91875180|gb|EB405137.1|EB405137
genomic: ATCTTTTCAGTGGGTGAAAGAGCGGAGACCACAAGTGCAACTGTCTGATGgtaacttcat ... ctttctgcagCAGCACAGCAGCAGCTGATTGAGTATGAAAAGAAGCTTTTTGGTTCTAATG
EST: ATCTTTTCAGTGGGTGAAAGAGCGGAGACCACAAGTGCAACTGTCTGATG CAGCACAGCAGCAGCTGATTGAGTATGAAAAGAAGCTTTTTGGTTCTAATGEST: gi|149112681|gb|EE295513.2|EE295513
genomic: ATCTTTTCAGTGGGTGAAAGAGCGGAGACCACAAGTGCAACTGTCTGATGgtaacttcat ... ctttctgcagCAGCACAGCAGCAGCTGATTGAGTATGAAAAGAAGCTTTTTGGTTCTAATG
EST: ATCTTTTCAGTGGGTGAAAGAGCGGAGACCACAAGTGCAACTGTCTGATG CAGCACAGCAGCAGCTGATTGAGTATGAAAAGAAGCTTTTTGGTTCTAATGEST: gi|78118997|gb|DV537381.1|DV537381
genomic: ATCTTTTCAGTGGGTGAAAGAGCGGAGACCACAAGTGCAACTGTCTGATGgtaacttcat ... ctttctgcagCAGCACAGCAGCAGCTGATTGAGTATGAAAAGAAGCTTTTTGGTTCTAATG
EST: ATCTTTTCAGTGGGTGAAAGAGCGGAGACCACAAGTGCAACTGTTTGATG CAGCACAGCAGCAGCTGATTGAGTATGAAAAGAAGCTTTTTGGTTCTAATGEST: gi|211350512|gb|FL033069.1|FL033069
genomic: ATCTTTTCAGTGGGTGAAAGAGCGGAGACCACAAGTGCAACTGTCTGATGgtaacttcat ... ctttctgcagCAGCACAGCAGCAGCTGATTGAGTATGAAAAGAAGCTTTTTGGTTCTAATG
EST: ATCTTTTCAGTGGGTGAAAGAGCGGAGACCACAAGTGCAACTGTCTGATG CAGCACAGCAGCAGCTGATTGAGTATGAAAAGAAGCTTTTTGGGTTCTA-TEST: gi|71314755|gb|DR794000.1|DR794000
genomic: ATCTTTTCAGTGGGTGAAAGAGCGGAGACCACAAGTGCAACTGTCTGATGgtaacttcat ... ctttctgcagCAGCACAGCAGCAGCTGATTGAGTATGAAAAGAAGCTTTTTGG-TTCTAAT
EST: ATCTTTTCAGTGGGTGAAAGAGCGGAGACCACAAGTGCAACTGTCTGATG CAGCACAGCAGCAGCTGATTGAGTATGAAAAGAAGCTTTTTGGTTCTAATGEST: gi|78107085|gb|DV525503.1|DV525503
genomic: ATCTTTTCAGTGGGTGAAAGAGCGGAGACCACAAGTGCAACTGTCTGATGgtaacttcat ... ctttctgcagCAGCACAGCAGCAGCTGATTGAGTATGAAAAGAAGCTTTTTGGTTCTAATG
EST: ATCTTTTCAGTGGGTGAAAGAGCGGAGACCACAAGTGCAACTGTCTGATG CAGCACAGCAGCAGCTGATTGAGTATGAAAAGAAGCTTTTTGGTTCTAATGEST: gi|78111707|gb|DV530104.1|DV530104
genomic: ATCTTTTCAGTGGGTGAAAGAGCGGAGACCACAAGTGCAACTGTCTGATGgtaacttcat ... ctttctgcagCAGCACAGCAGCAGCTGATTGAGTATGAAAAGAAGCTTTTTGGTTCTAATG
EST: ATCTTTTCAGTGGGTGAAAGAGCGGAGACCACAAGTGCAACTGTCTGATG CAGCACAGCAGCAGCTGATTGAGTATGAAAAGAAGCTTTTTGGTTCTAATGEST: gi|78107086|gb|DV525504.1|DV525504
genomic: ATCTTTTCAGTGGGTGAAAGAGCGGAGACCACAAGTGCAACTGTCTGATGgtaacttcat ... ctttctgcagCAGCACAGCAGCAGCTGATTGAGTATGAAAAGAAGCTTTTTGGTTCTAATG
EST: ATCTTTTCAGTGGGTGAAAGAGCGGAGACCACAAGTGCAACTGTCTGATG CAGCACAGCAGCAGCTGATTGAGTATGAAAAGAAGCTTTTTGGTTCTAATGEST: gi|71301897|gb|DR787018.1|DR787018
genomic: ATCTTTTCAGTGGGTGAAAGAGCGGAGACCACAAGTGCAACTGTCTGATGgtaacttcat ... ctttctgcagCAGCACAGCAGCAGCTGATTGAGTATGAAAAGAAGCTTTTTGGTTCTAATG
EST: ATCTTTTCAGTGGGTGAAAGAGCGGAGACCACAAGTGCAACTGTCTGATG CAGCACAGCAGCAGCTGATTGAGTATGAAAAGAAGCTTTTTGGTTCTAATGEST: gi|84969786|gb|DW468209.1|DW468209
genomic: ATCTTTTCAGTGGGTGAAAGAGCGGAGACCACAAGTGCAACTGTCTGATGgtaacttcat ... ctttctgcagCAGCACAGCAGCAGCTGATTGAGTATGAAAAGAAGCTTTTTGGTTCTAATG
EST: ATCTTTTCAGTGGGTGAAAGAGCGGAGACCACAAGTGCAACTGTCTGATG CAGCACAGCAGCAGCTGATTGAGTATGAAAAGAAGCTTTTTGGTTCTAATGEST: gi|211350511|gb|FL033068.1|FL033068
genomic: ATCTTTTCAGTGGGTGAAAGAGCGGAGACCACAAGTGCAACTGTCTGATGgtaacttcat ... ctttctgcagCAGCACAGCAGCAGCTGATTGAGTATGAAAAGAAGCTTTTTGGTTCTAATG
EST: TCTTTTCAGTGGGTGAAAGAGCGGAGACCACAAGTGGCA-CTGTCTGATG CAGCACAGCAGCAGCTGATTGAGTATGAAAAGAAGCTTTTTEST: gi|86468555|gb|DY234925.1|DY234925
genomic: TCTTTTCAGTGGGTGAAAGAGCGGAGACCACAAGTG-CAACTGTCTGATGgtaacttcat ... ctttctgcagCAGCACAGCAGCAGCTGATTGAGTATGAAAAGAAGCTTTTT
EST: CACAAGTGCAACTGTCTGATG CAGCACAGCAGCAGCTGATTGAGTATGAAAAGAAGCTTTTTGGTTCTAATGEST: gi|108824288|gb|EC278296.1|EC278296
genomic: CACAAGTGCAACTGTCTGATGgtaacttcat ... ctttctgcagCAGCACAGCAGCAGCTGATTGAGTATGAAAAGAAGCTTTTTGGTTCTAATG
EST: ATCTTTTCAGTGGGTGAAAGAGCGGAGACCACAAGTGCAACTGTCTGATG CAGCACAGCAGCAGCTGATTGAGTATGAAAAGAGGCTTTTTGGTTCTAATGEST: gi|50335078|gb|CO530204.1|CO530204
genomic: ATCTTTTCAGTGGGTGAAAGAGCGGAGACCACAAGTGCAACTGTCTGATGgtaacttcat ... ctttctgcagCAGCACAGCAGCAGCTGATTGAGTATGAAAAGAAGCTTTTTGGTTCTAATG
EST: ATCTTTTCAGTGGGTGAAAGAGCGGAGACCACAAGTGCAACTGTCTGATG CAGCACAGCAGCAGCTGATTGAGTATGAAAAGAAGCTTTTTGGTTCTAATG
genomic: ATCTTTTCAGTGGGTGAAAGAGCGGAGACCACAAGTGCAACTGTCTGATGgtaacttcat ... ctttctgcagCAGCACAGCAGCAGCTGATTGAGTATGAAAAGAAGCTTTTTGGTTCTAATG
aaataatagtgcatttaccaagtgctaacattagtgatgaacttgctttctgcagCAGCACAGCAGCAGCTGATTGAGTATGAAAAGAAGCTTTTTGGTTCTAATGATGGCAGCATACCAGCTCAACCTTTTGCTCCAGTGGATTCGCTCCCTTC
tgctaac putative branch site (score: 90)
cttgctttct putative PPT
taacatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggtaatacaagttctcacacttaaatttggaccttctagccacacaaataatagtgcatttaccaagtgctaacattagtgatgaacttgctttctgcagCAGCACAGCAGCAGCTGATTGAGTATGAAAAGAAGCTTTTTGGTTCTAATGATGGCAGCATACCAGCTCAACCTTTTGCTCCAGTGGATTCGCTCCCTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- -aatacaa
- - - - - - -ctcacac
- - - - - - - - - - - - - - - - - - - - -acacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - -gtgcatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caagtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgatgaa