1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtttcgtaatcactgtgacctgcatacaaaaaataaatgacttgtggagccaattgtaacttttcatgtattggtggtgcagGTGCAACAAATAACTGTTCAAGTAGCATAGAGAGTCCATCTGGTACTTGGCCAACTTCTGAAGCAGTTGAGCAAGAAATTGTGGTTCCATCACTCCATG
species | Zea mays |
transcript | GRMZM2G170148_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CTTGCTCAATCTCTCAGTGCTGGTCTTGTTCCAG GTGCAACAAATAACTGTTCAAGTAGCATAGAGAGTCCATCTGGTACTTGGCEST: gi|60358291|gb|DN225264.1|DN225264
genomic: CTTGCTCAATCTCTCAGTGCTGGTCTTGTTCCAGgtttcgtaat ... ggtggtgcagGTGCAACAAATAACTGTTCAAGTAGCATAGAGAGTCCATCTGGTACTTGGC
EST: TTCCTGGGACAATACTCTTGCTCAATCTCTCAGTGCTGGTCTTGTTCCAG GTGCAACAAATAACTGTTCAAGTAGCATAGAGAGTCCATCTGGTACTTGGCEST: gi|149001408|gb|EE038705.2|EE038705
genomic: TTCCTGGGACAATACTCTTGCTCAATCTCTCAGTGCTGGTCTTGTTCCAGgtttcgtaat ... ggtggtgcagGTGCAACAAATAACTGTTCAAGTAGCATAGAGAGTCCATCTGGTACTTGGC
EST: TCAGTGCTGGTCTTTTTCCAG GGGCAACAAATAACTGTTCAAGTAGCATAGAGAGTCCATCTGGTACTTGGC
genomic: TCAGTGCTGGTCTTGTTCCAGgtttcgtaat ... ggtggtgcagGTGCAACAAATAACTGTTCAAGTAGCATAGAGAGTCCATCTGGTACTTGGC
aaaaaataaatgacttgtggagccaattgtaacttttcatgtattggtggtgcagGTGCAACAAATAACTGTTCAAGTAGCATAGAGAGTCCATCTGGTACTTGGCCAACTTCTGAAGCAGTTGAGCAAGAAATTGTGGTTCCATCACTCCATG
ttgtaac putative branch site (score: 51)
ataaatga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttcgtaatcactgtgacctgcatacaaaaaataaatgacttgtggagccaattgtaacttttcatgtattggtggtgcagGTGCAACAAATAACTGTTCAAGTAGCATAGAGAGTCCATCTGGTACTTGGCCAACTTCTGAAGCAGTTGAGCAAGAAATTGTGGTTCCATCACTCCATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA