1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtcaaacactttaccatgcacaatgagtgttgatatttttgatgattttttttaaataaatggttacttgctggtttatgcagCTTGACATTTATTCATTGTCAAGGAAATGGAAAGAGTTAGTTGATAAGGCGCGAGCAAAGCAGTTGCAGCCCCATGAGTACAACTCTG
species | Zea mays |
transcript | GRMZM2G165176_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGGCCATAGATGGTGGGTTGATTACACCAGTTCTTCAAGATGCTGATAAG CTTGACATTTATTCATTGTCAAGGAAATGGAAAGAGTTAGTTGATAAGGCGEST: gi|31349635|gb|CD433992.1|CD433992
genomic: TGGCCATAGATGGTGGGTTGATTACACCAGTTCTTCAAGATGCTGATAAGgtcaaacact ... gtttatgcagCTTGACATTTATTCATTGTCAAGGAAATGGAAAGAGTTAGTTGATAAGGCG
EST: TGGCCATAGATGGTGGGTTGATTACACCAGTTCTTCAAGATGCTGATAAG CTTGACATTTATTCATTGTCAAGGAAATGGAAAGAGTTAGTTGATAAGGCGEST: gi|50333015|gb|CO528141.1|CO528141
genomic: TGGCCATAGATGGTGGGTTGATTACACCAGTTCTTCAAGATGCTGATAAGgtcaaacact ... gtttatgcagCTTGACATTTATTCATTGTCAAGGAAATGGAAAGAGTTAGTTGATAAGGCG
EST: TGGCCATAGATGGTGGGTTGATTACACCAGTTCTTCAAGATGCTGATAAG CTTGACATTTATTCATTGTCAAGGAAATGGAAAGAGTTAGTTGATAAGGCGEST: gi|148963616|gb|EE014658.2|EE014658
genomic: TGGCCATAGATGGTGGGTTGATTACACCAGTTCTTCAAGATGCTGATAAGgtcaaacact ... gtttatgcagCTTGACATTTATTCATTGTCAAGGAAATGGAAAGAGTTAGTTGATAAGGCG
EST: GGCCATAGATGGTGGGTGGATTACACCAGTTCTTCAAGATGGTGATAAGG CTTGACATTTATTCATTGTCAAGGAAATGGAAAGAGTTAGTTGATAAGGCEST: gi|149089772|gb|EE179047.2|EE179047
genomic: GGCCATAGATGGTGGGTTGATTACACCAGTTCTTCAAGATGCTGATAA-Ggtcaaacact ... gtttatgcagCTTGACATTTATTCATTGTCAAGGAAATGGAAAGAGTTAGTTGATAAGGC
EST: TGGCCATAGATGGTGGGTTGATTACACCAGTTCTTCAAGATGCTGATAAG CTTGACATTTATTCATTGTCAAGGAAATGGAAAGAGTTAGTTGATAAGGCGEST: gi|101400418|gb|EB822024.1|EB822024
genomic: TGGCCATAGATGGTGGGTTGATTACACCAGTTCTTCAAGATGCTGATAAGgtcaaacact ... gtttatgcagCTTGACATTTATTCATTGTCAAGGAAATGGAAAGAGTTAGTTGATAAGGCG
EST: TGGCCATAGATGGTGGGTTGATTACACCAGTTCTTCAAGATGCTGATAAG CTTGACATTTATTCATTGTCAAGGAAATGGAAAGAGTTAGTTGATAAGGCGEST: gi|71430961|gb|DR812011.1|DR812011
genomic: TGGCCATAGATGGTGGGTTGATTACACCAGTTCTTCAAGATGCTGATAAGgtcaaacact ... gtttatgcagCTTGACATTTATTCATTGTCAAGGAAATGGAAAGAGTTAGTTGATAAGGCG
EST: TGGCCATAGATGGTGGGTTGATTACACCAGTTCTTCAAGATGCTGATAAG CTTGACATTTATTCATTGTCAAGGAAATGGAAAGAGTTAGTTGATAAGGCGEST: gi|37398364|gb|CF636494.1|CF636494
genomic: TGGCCATAGATGGTGGGTTGATTACACCAGTTCTTCAAGATGCTGATAAGgtcaaacact ... gtttatgcagCTTGACATTTATTCATTGTCAAGGAAATGGAAAGAGTTAGTTGATAAGGCG
EST: TGGCCATAGATGGTGGGTTGATTACACCAGTTCTTCAAGATGCTGATAAG CTTGACATTTATTCATTGTCAAGGAAATGGAAAGAGTTAGTTGATAAGGCGEST: gi|31356951|gb|CD441308.1|CD441308
genomic: TGGCCATAGATGGTGGGTTGATTACACCAGTTCTTCAAGATGCTGATAAGgtcaaacact ... gtttatgcagCTTGACATTTATTCATTGTCAAGGAAATGGAAAGAGTTAGTTGATAAGGCG
EST: TGGCCATAGATGGTGGGTTGATTACACCAGTTCTTCAAGATGCTGATAAG CTTGACATTTATTCATTGTCAAGGAAATGGAAAGAGTTAGTTGATAAGGCGEST: gi|211076029|gb|FL472760.1|FL472760
genomic: TGGCCATAGATGGTGGGTTGATTACACCAGTTCTTCAAGATGCTGATAAGgtcaaacact ... gtttatgcagCTTGACATTTATTCATTGTCAAGGAAATGGAAAGAGTTAGTTGATAAGGCG
EST: TGGCCATAGATGGTGGGTTGATTACACCAGTTCTTCAAGATGCTGATAAG CTTGACATTTATTCATTGTCAAGGAAATGGAAAGAGTTAGTTGATAAGGCG
genomic: TGGCCATAGATGGTGGGTTGATTACACCAGTTCTTCAAGATGCTGATAAGgtcaaacact ... gtttatgcagCTTGACATTTATTCATTGTCAAGGAAATGGAAAGAGTTAGTTGATAAGGCG
gttgatatttttgatgattttttttaaataaatggttacttgctggtttatgcagCTTGACATTTATTCATTGTCAAGGAAATGGAAAGAGTTAGTTGATAAGGCGCGAGCAAAGCAGTTGCAGCCCCATGAGTACAACTCTG
ttttgat putative branch site (score: 233)
tatttttgatgatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcaaacactttaccatgcacaatgagtgttgatatttttgatgattttttttaaataaatggttacttgctggtttatgcagCTTGACATTTATTCATTGTCAAGGAAATGGAAAGAGTTAGTTGATAAGGCGCGAGCAAAGCAGTTGCAGCCCCATGAGTACAACTCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG