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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...caatacattcatcctcatccctctacccagctagacagcttcatccttttcatttcctaaggaagggcatttccttagctgtttctctattttcctgcagGTGATGGCTCCACGTCTCGTGCAATCTTTGTTTGCAGCTTTTGGAGATCTATACCTATATAAACTTTCCAAACTTATTTTCAATGGTCAAGTTGCTAAGT

Basic information

species Zea mays
transcript GRMZM2G164175_T02
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G164175_T02 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os01g39810.4 (Oryza sativa), 3'ss of exon 1
caatacattcatcct-catccctctacccagctagacagcttcatccttttcatttcctaaggaagggcatttccttagctgtt-----tctctattttcctgcagGTGATGGCTCCACGTCTCGTGCAATCTTTGTTTGCAGCTTTTGGAGATCTATACCTATATAAACTTTCCAAACTTATTTTCAATGGTCAAGTTGCTAAGT
   ||  |  |||    ||| |||  | | ||   |  |||| ||  |||| |    || || |   | |||| ||||  | ||     | | | ||| ||  |||| |||||||||||||||  | |||||  | |||||| ||||||| ||||| ||| ||||||||||||| ||||| |||||||||  ||| |||||  |||
---tatgtgaatcaaatatcactcctctctgc---atggctttattttttttacgcactgagaagcagaattttcttattttttctttgtttttttttccccacagGCGATGGCTCCACGTCTTCTACAATCAGTCTTTGCATCTTTTGGGGATCTCTACTTATATAAACTTTCAAAACTCATTTTCAATAATCACGTTGCCCAGT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71764472|gb|DR962409.1|DR962409
EST:     CTTTGTACAAGACCCTGGCGCTACTCCATCTGGACACTCCGTGGGTTATG                         GTGATGGCTCCACGTCTCGTGCAATCTTTGTTTGCAGCTTTTGGAGATCTA
genomic: CTTTGTACAAGACCCTGGCGCTACTCCATCTGGACACTCCGTGGGTTATGgtaatagcct ... tttcctgcagGTGATGGCTCCACGTCTCGTGCAATCTTTGTTTGCAGCTTTTGGAGATCTA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttttcatttcctaaggaagggcatttccttagctgtttctctattttcctgcagGTGATGGCTCCACGTCTCGTGCAATCTTTGTTTGCAGCTTTTGGAGATCTATACCTATATAAACTTTCCAAACTTATTTTCAATGGTCAAGTTGCTAAGT
                        tttccttagctgtttc  CT-rich tract
                                        tctatttt  TA-rich tract