1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tagtatgcttttggctgccttttgaggttttgtttgaactgaactgagagtcacagctgactagcttctctttctggtttgctgcaatatatgcatgcagTTGCTGAGTGATCCATACATGAAGACAAGCAGTAGCAAG
species | Zea mays |
transcript | GRMZM2G162893_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TTCTGTATGAGGCGATAAATTACATCAAGTGGTTGCATGAACAAGTGCAG TTGCTGAGTGATCCATACATGAAGACAAGCAGTAGCAAG
genomic: TTCTGTATGAGGCGATAAATTACATCAAGTGGTTGCATGAACAAGTGCAGgtaataacct ... atgcatgcagTTGCTGAGTGATCCATACATGAAGACAAGCAGTAGCAAG
gagagtcacagctgactagcttctctttctggtttgctgcaatatatgcatgcagTTGCTGAGTGATCCATACATGAAGACAAGCAGTAGCAAG
agctgac putative branch site (score: 91)
aatatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tagtatgcttttggctgccttttgaggttttgtttgaactgaactgagagtcacagctgactagcttctctttctggtttgctgcaatatatgcatgcagTTGCTGAGTGATCCATACATGAAGACAAGCAGTAGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- -tatgctt
- - - - - - ggctgcc
- - - - - - - - - - - - - - -ttgtttg
- - - - - - - - - - - - - - - - - tgaactg
- - - - - - - - - - - - - - - - - - - - - - - - - - acagctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gctgcaa