1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tgtcaagtatgcatttccttgtttgttacaagttatttggtatctgttatgactgatgaagttcgtttaggaacaaatctgacactcagtttcactatagGATGATGATTTCTTGGGCGTGGTCGACATATTTTCGCATGGTGGTGATAAGAAGGCACCATTGAAACCTCCAGTGAGGAAGGCGCTCGCAATGTTCAGCG
species | Zea mays |
transcript | GRMZM2G160996_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ATCAACTTCCTCAGAAGGTTCTTCATCCTAAACTGAAGAAGTCAAACAAG GATGATGATTTTCTTGGGCGTGTTCGACATATTTTCGCATGTTGGTGATEST: gi|211203702|gb|FL472025.1|FL472025
genomic: ATCAACTTCCTCAGAAGGTTCTTCATCCTAAACTGAAGAAGTCAAACAAGgttagtgcgc ... ttcactatagGATGATGATTT-CTTGGGCGTGGTCGACATATTTTCGCATGGTGGTGAT
EST: ATCAACTTCCTCAGAAGGTTCTTCATCCTAAACTGAAGAAGTCAAACAAG GATGATGATTTCTTGGGCGTGGTCGACATATTTTCGCATGGTGGTGATAAGEST: gi|211260639|gb|FL352273.1|FL352273
genomic: ATCAACTTCCTCAGAAGGTTCTTCATCCTAAACTGAAGAAGTCAAACAAGgttagtgcgc ... ttcactatagGATGATGATTTCTTGGGCGTGGTCGACATATTTTCGCATGGTGGTGATAAG
EST: ATCAACTTCCTCAGAAGGTTCTTCATCCTAAACTGAAGAAGTCAAACAAG GATGATGATTTCTTGGGCGTGGTCGACATATTTTCGCATGGTGGTGATAAGEST: gi|60355783|gb|DN222756.1|DN222756
genomic: ATCAACTTCCTCAGAAGGTTCTTCATCCTAAACTGAAGAAGTCAAACAAGgttagtgcgc ... ttcactatagGATGATGATTTCTTGGGCGTGGTCGACATATTTTCGCATGGTGGTGATAAG
EST: ATCAACTTCCTCAGAAGGTTCTTCATCCTAAACTGAAGAAGTCAAACAAG GATGATGATTTCTTGGGCGTGGTCGACATATTTTCGCATGGTGGTGATAAGEST: gi|60394073|gb|DN226943.1|DN226943
genomic: ATCAACTTCCTCAGAAGGTTCTTCATCCTAAACTGAAGAAGTCAAACAAGgttagtgcgc ... ttcactatagGATGATGATTTCTTGGGCGTGGTCGACATATTTTCGCATGGTGGTGATAAG
EST: ATCAACTTCCTCAGAAGGTTCTTCATCCTAAACTGAAGAAGTCAAACAAG GATGATGATTTCTTGGGCGTGGTCGACATATTTTCGCATGGTGGTGATAAG
genomic: ATCAACTTCCTCAGAAGGTTCTTCATCCTAAACTGAAGAAGTCAAACAAGgttagtgcgc ... ttcactatagGATGATGATTTCTTGGGCGTGGTCGACATATTTTCGCATGGTGGTGATAAG
gttatgactgatgaagttcgtttaggaacaaatctgacactcagtttcactatagGATGATGATTTCTTGGGCGTGGTCGACATATTTTCGCATGGTGGTGATAAGAAGGCACCATTGAAACCTCCAGTGAGGAAGGCGCTCGCAATGTTCAGCG
atctgac putative branch site (score: 16)
tttcact putative PPT
aacaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtcaagtatgcatttccttgtttgttacaagttatttggtatctgttatgactgatgaagttcgtttaggaacaaatctgacactcagtttcactatagGATGATGATTTCTTGGGCGTGGTCGACATATTTTCGCATGGTGGTGATAAGAAGGCACCATTGAAACCTCCAGTGAGGAAGGCGCTCGCAATGTTCAGCG
- - - gtatgca
- - - - - - - - - -tgtttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - ctgatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgacac