1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtaaggcacaataccaagtttctcttatctttattttgattcctgcagcgtaatgactgaacttagcttttgcaatgcagCTATATACCATCACAACTCTGATTCTTACTGGACAGACGATCTACTATAGCCACATCTACCATCATCTTAAACTAAAAAACTCCAGGGCAGCTAGCAAG
species | Zea mays |
transcript | GRMZM2G153434_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CTGCCAACTCAGTTCTACATGGCACTG CTATATACCATCACAACTCTGATTCTTACTGGACAGACGATCTACTATAGCEST: gi|71307331|gb|DR789850.1|DR789850
genomic: CTGCCAACTCAGTTCTACATGGCACTGgtaaggcaca ... tgcaatgcagCTATATACCATCACAACTCTGATTCTTACTGGACAGACGATCTACTATAGC
EST: CTGCCAACTCAGTTCTACATGGCACTG CTATATACCATCACAACTCTGATTCTTACTGGACAGACGATCTACTATAGCEST: gi|32836692|gb|CD976370.1|CD976370
genomic: CTGCCAACTCAGTTCTACATGGCACTGgtaaggcaca ... tgcaatgcagCTATATACCATCACAACTCTGATTCTTACTGGACAGACGATCTACTATAGC
EST: CTGCCAACTCAGTTCTACATGGCACTG CTATATACCATCACAACTCTGATTCTTACTGGACAGACGATCTACTATAGCEST: gi|120479959|gb|EH210676.1|EH210676
genomic: CTGCCAACTCAGTTCTACATGGCACTGgtaaggcaca ... tgcaatgcagCTATATACCATCACAACTCTGATTCTTACTGGACAGACGATCTACTATAGC
EST: CTGCCAACTCAGTTCTACATGGCACTG CTATATACCATCACAACTCTGATTCTTACTGGACAGACGATCTACTATAGC
genomic: CTGCCAACTCAGTTCTACATGGCACTGgtaaggcaca ... tgcaatgcagCTATATACCATCACAACTCTGATTCTTACTGGACAGACGATCTACTATAGC
tatctttattttgattcctgcagcgtaatgactgaacttagcttttgcaatgcagCTATATACCATCACAACTCTGATTCTTACTGGACAGACGATCTACTATAGCCACATCTACCATCATCTTAAACTAAAAAACTCCAGGGCAGCTAGCAAG
ttttgat putative branch site (score: 61)
cttttgc putative PPT
ttattttgatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaggcacaataccaagtttctcttatctttattttgattcctgcagcgtaatgactgaacttagcttttgcaatgcagCTATATACCATCACAACTCTGATTCTTACTGGACAGACGATCTACTATAGCCACATCTACCATCATCTTAAACTAAAAAACTCCAGGGCAGCTAGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG