1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtcagtgcggcgtttgtggttgatcaattcaacgaacgaagcaacgggatcctgatcctgctgtgctgctgctacagGTAAACCTTGTAGAGTGGCTCAAGAACAAGGTGACCAACAGGGACTACGAGGCCATCGTGGACCCGAAGCTGCCGGAGAAGCCGTCCTCCAAGGCTCTCA
species | Zea mays |
transcript | GRMZM2G147051_T03 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGATCATCTCCGGCCGAAGCCCCGTCGATTACGCCAGGCCTGCCGGAGAG GTAAACCTTGTAGAGTGGCTCAAGAACAAGGTGACCAACAGGGACTACGAGEST: gi|29946455|gb|CB816158.1|CB816158
genomic: AGATCATCTCCGGCCGAAGCCCCGTCGACTACGCCAGGCCTGCCGGAGAGgtcagtgcgg ... gctgctacagGTAAACCTTGTAGAGTGGCTCAAGAACAAGGTGACCAACAGGGACTACGAG
EST: AGATCATCTCCGGCCGAAGCCCCGTCGACTACGCCAGGCCTGCCGGAGAG GTAANCCTTGTAGAGTGGCTCAAGAACAAGGTGACCAACAGGGACTACGAGEST: gi|71762919|gb|DR960856.1|DR960856
genomic: AGATCATCTCCGGCCGAAGCCCCGTCGACTACGCCAGGCCTGCCGGAGAGgtcagtgcgg ... gctgctacagGTAAACCTTGTAGAGTGGCTCAAGAACAAGGTGACCAACAGGGACTACGAG
EST: AGATCATCTCCGGCCGAAGCCCCGTCGATTACGCCAGGCCTGCCGGAGAG GTAAACCTTGTAGAGTGGCTCAAGAACAAGGTGACCAACAGGGACTACGAGEST: gi|31909293|gb|CD650846.1|CD650846
genomic: AGATCATCTCCGGCCGAAGCCCCGTCGACTACGCCAGGCCTGCCGGAGAGgtcagtgcgg ... gctgctacagGTAAACCTTGTAGAGTGGCTCAAGAACAAGGTGACCAACAGGGACTACGAG
EST: AGATCATCTCCGGCCGAAGCCCCGTCGACTACGCCAGGCCTGCCGGAGAG GTAAACCTTGTAGAGTGGCTCAAGAACAAGGTGACCAACAGGGACTACGAGEST: gi|93014131|gb|EB639651.1|EB639651
genomic: AGATCATCTCCGGCCGAAGCCCCGTCGACTACGCCAGGCCTGCCGGAGAGgtcagtgcgg ... gctgctacagGTAAACCTTGTAGAGTGGCTCAAGAACAAGGTGACCAACAGGGACTACGAG
EST: AGATCATCTCCGGCCGAAGCCCCGTCGACTACGCCAGGCCTGCCGGAGAG GTAAACCTTGTAGAGTGGCTCAAGAACAAGGTGACCAACAGGGACTACGAGEST: gi|110532757|gb|EE036937.1|EE036937
genomic: AGATCATCTCCGGCCGAAGCCCCGTCGACTACGCCAGGCCTGCCGGAGAGgtcagtgcgg ... gctgctacagGTAAACCTTGTAGAGTGGCTCAAGAACAAGGTGACCAACAGGGACTACGAG
EST: GATCATCTCCGGCGGAAGCCCCGTTG-CTTACGCCAGGCCTGCCGGAGAG GTAAACCTTGTAGAGTGGCTCAAGAACAAGGTGACCAACAGGGACTACGAGEST: gi|149061074|gb|EE157329.2|EE157329
genomic: GATCATCTCCGGCCGAAGCCCCGTCGAC-TACGCCAGGCCTGCCGGAGAGgtcagtgcgg ... gctgctacagGTAAACCTTGTAGAGTGGCTCAAGAACAAGGTGACCAACAGGGACTACGAG
EST: AGATCATCTCCGGCCGAAGCCCCGTCGACTACGCCAGGCCTGCCGGAGAG GTAAACCTTGTAGAGTGGCTCAAGAACAAGGTGACCAACAGGGACTACGAGEST: gi|71308371|gb|DR790412.1|DR790412
genomic: AGATCATCTCCGGCCGAAGCCCCGTCGACTACGCCAGGCCTGCCGGAGAGgtcagtgcgg ... gctgctacagGTAAACCTTGTAGAGTGGCTCAAGAACAAGGTGACCAACAGGGACTACGAG
EST: AGATCATCTCCGGCCGAAGCCCCGTCGACTACGCCAGGCCTGCCGGAGAG GTAAACCTTGTAGAGTGGCTCAAGAACAAGGTGACCAACAGGGACTACGAGEST: gi|211021101|gb|FL442869.1|FL442869
genomic: AGATCATCTCCGGCCGAAGCCCCGTCGACTACGCCAGGCCTGCCGGAGAGgtcagtgcgg ... gctgctacagGTAAACCTTGTAGAGTGGCTCAAGAACAAGGTGACCAACAGGGACTACGAG
EST: GAAGCCCCGTCGATTA-GCCAAGGCCTGCCGGAGAG GTAAACCTGGTAGAGTGGCTCAAGAACAAGGTGACCAACAGGGACTACGAGEST: gi|31909329|gb|CD650864.1|CD650864
genomic: GAAGCCCCGTCGACTACGCC-AGGCCTGCCGGAGAGgtcagtgcgg ... gctgctacagGTAAACCTTGTAGAGTGGCTCAAGAACAAGGTGACCAACAGGGACTACGAG
EST: AGATCATCTCCGGCCGAAGCCCCGTCGACTACGCCAGGCCTGCCGGAGAG GTAAACCTTGTAGAGTGGCTCAAGAACAAGGTGACCAACAGGGACTACGAGEST: gi|30088116|gb|CB886321.1|CB886321
genomic: AGATCATCTCCGGCCGAAGCCCCGTCGACTACGCCAGGCCTGCCGGAGAGgtcagtgcgg ... gctgctacagGTAAACCTTGTAGAGTGGCTCAAGAACAAGGTGACCAACAGGGACTACGAG
EST: AGATCATCTCCGGCCGAAGCCCCGTCGACTACGCCAGGCCTGCCGGAGAG GTAAACCTTGTAGAGTGGCTCAAGAACAAGGTGACCAACAGGGACTACGAGEST: gi|28909856|gb|CB331133.1|CB331133
genomic: AGATCATCTCCGGCCGAAGCCCCGTCGACTACGCCAGGCCTGCCGGAGAGgtcagtgcgg ... gctgctacagGTAAACCTTGTAGAGTGGCTCAAGAACAAGGTGACCAACAGGGACTACGAG
EST: AGATCATCTCCGGCCGAAGCCCCGTCGACTACGCCAGGCCTGCCGGAGAG GTAAACCTTGTAGAGTGGCTCAAGAACAAGGTGAEST: gi|60359282|gb|DN226255.1|DN226255
genomic: AGATCATCTCCGGCCGAAGCCCCGTCGACTACGCCAGGCCTGCCGGAGAGgtcagtgcgg ... gctgctacagGTAAACCTTGTAGAGTGGCTCAAGAACAAGGTGA
EST: AGATCATCTCCGGCCGAAGCCCCGTCGACTACGCCAGGCCTGCCGGAGAG GTAAACCTTGTAGAGTGGCTCAAGAACAAGGTGACCAACAGGGACTACGAGEST: gi|71315684|gb|DR794463.1|DR794463
genomic: AGATCATCTCCGGCCGAAGCCCCGTCGACTACGCCAGGCCTGCCGGAGAGgtcagtgcgg ... gctgctacagGTAAACCTTGTAGAGTGGCTCAAGAACAAGGTGACCAACAGGGACTACGAG
EST: AGATCATCTCCGGCCGAAGCCCCGTCGACTACGCCAGGCCTGCCGGAGAG GTAAACCTTGTAGAGTGGCTCAAGAACAAGGTGACCAACAGGGACTACGAGEST: gi|31909517|gb|CD650958.1|CD650958
genomic: AGATCATCTCCGGCCGAAGCCCCGTCGACTACGCCAGGCCTGCCGGAGAGgtcagtgcgg ... gctgctacagGTAAACCTTGTAGAGTGGCTCAAGAACAAGGTGACCAACAGGGACTACGAG
EST: AGATCATCTCCGGCCGAAGCCCCGTCGACTACGCCAGGCCTGCCGGAGAG GTAAACCTTGTAGAGTGGCTCAAGAACAAGGTGACCAACAGGGACTACGAGEST: gi|50337020|gb|CO532146.1|CO532146
genomic: AGATCATCTCCGGCCGAAGCCCCGTCGACTACGCCAGGCCTGCCGGAGAGgtcagtgcgg ... gctgctacagGTAAACCTTGTAGAGTGGCTCAAGAACAAGGTGACCAACAGGGACTACGAG
EST: ACGCCAGGCCTGCCGGAGAG GTAAACCTTGTAGAGTGGCTCAAGAACAAGGTGACCAACAGGGACTACGAGEST: gi|93280862|gb|EB673126.1|EB673126
genomic: ACGCCAGGCCTGCCGGAGAGgtcagtgcgg ... gctgctacagGTAAACCTTGTAGAGTGGCTCAAGAACAAGGTGACCAACAGGGACTACGAG
EST: AGATCATCTCCGGCCGAAGCCCCGTCGACTACGCCAGGCCTGCCGGAGAG GTAAACCTTGTAGAGTGGCTCAAGAACAAGGTGACCAACAGGGACTACGAGEST: gi|31909295|gb|CD650847.1|CD650847
genomic: AGATCATCTCCGGCCGAAGCCCCGTCGACTACGCCAGGCCTGCCGGAGAGgtcagtgcgg ... gctgctacagGTAAACCTTGTAGAGTGGCTCAAGAACAAGGTGACCAACAGGGACTACGAG
EST: AGATCATCTCCGGCCGAAGCCCCGTCGACTACGCCAGGCCTGCCGGAGAG GTAAACCTTGTAGAGTGGCTCEST: gi|91878715|gb|EB408672.1|EB408672
genomic: AGATCATCTCCGGCCGAAGCCCCGTCGACTACGCCAGGCCTGCCGGAGAGgtcagtgcgg ... gctgctacagGTAAACCTTGTAGAGTGGCTC
EST: GATCATCTCCGGCCGAAGCCCCGTGGACTACGCCAGGGCCTGCCGGAGAGG GTAAACCTTGTAGAGTGGCTCAAGAACAAGGTGACCAACAGGGACTACGAEST: gi|28987043|gb|CB351436.1|CB351436
genomic: GATCATCTCCGGCCGAAGCCCCGTCGACTACGCCA-GGCCTGCCGGAGA-Ggtcagtgcgg ... gctgctacagGTAAACCTTGTAGAGTGGCTCAAGAACAAGGTGACCAACAGGGACTACGA
EST: AGATCATCTCCGGCCGAAGCCCCGTCGACTACGCCAGGCCTGCCGGAGAG GTAAACCTTGTAGAGTGGCTCAAGAACAAGGTGACCAACAGGGACTACGAGEST: gi|71315686|gb|DR794464.1|DR794464
genomic: AGATCATCTCCGGCCGAAGCCCCGTCGACTACGCCAGGCCTGCCGGAGAGgtcagtgcgg ... gctgctacagGTAAACCTTGTAGAGTGGCTCAAGAACAAGGTGACCAACAGGGACTACGAG
EST: AGATCATCTCCGGCCGAAGCCCCGTCGACTACGCCAGGCCTGCCGGAGAG GTAAACCTTGTAGAGTGGCTCAAGAACAAGGTGACCAACAGGGACTACGAGEST: gi|37396493|gb|CF635537.1|CF635537
genomic: AGATCATCTCCGGCCGAAGCCCCGTCGACTACGCCAGGCCTGCCGGAGAGgtcagtgcgg ... gctgctacagGTAAACCTTGTAGAGTGGCTCAAGAACAAGGTGACCAACAGGGACTACGAG
EST: AGATCATCTCCGGCCGAAGCCCCGTCGACTACGCCAGGCCTGCCGGAGAG GTAAACCTTGTAGAGTGGCTCAAGAACAAGGTGACCAACAGGGACTACGAGEST: gi|29167724|gb|CB410984.1|CB410984
genomic: AGATCATCTCCGGCCGAAGCCCCGTCGACTACGCCAGGCCTGCCGGAGAGgtcagtgcgg ... gctgctacagGTAAACCTTGTAGAGTGGCTCAAGAACAAGGTGACCAACAGGGACTACGAG
EST: AGATCATCTCCGGCCGAAGCCCCGTCGACTACGCCAGGCCTGCCGGAGAG GTAAACCTTGTAGAEST: gi|31909042|gb|CD650722.1|CD650722
genomic: AGATCATCTCCGGCCGAAGCCCCGTCGACTACGCCAGGCCTGCCGGAGAGgtcagtgcgg ... gctgctacagGTAAACCTTGTAGA
EST: AGATCATCTCCGGCCGAAGCCCCGTCGACTACGCCAGGCCTGCCGGAGAG GTAAACCTTGTAGAGTGGCTCAAGAACAAGGTGACCAACAGGGACTACGAGEST: gi|4646607|gb|AI491416.2|AI491416
genomic: AGATCATCTCCGGCCGAAGCCCCGTCGACTACGCCAGGCCTGCCGGAGAGgtcagtgcgg ... gctgctacagGTAAACCTTGTAGAGTGGCTCAAGAACAAGGTGACCAACAGGGACTACGAG
EST: AGATCATCTCCGGCCGAAGCCCCGTCGACTACGCCAGGCCTGCCGGAGAG GTAAACCTTGTAGAGTGGCTCAAGAACAAGGTGACCAACAGGGACTACGAGEST: gi|211492061|gb|FL444499.1|FL444499
genomic: AGATCATCTCCGGCCGAAGCCCCGTCGACTACGCCAGGCCTGCCGGAGAGgtcagtgcgg ... gctgctacagGTAAACCTTGTAGAGTGGCTCAAGAACAAGGTGACCAACAGGGACTACGAG
EST: AGATCATCTCCGGCCGAAGCCCCGTCGACTACGCCAGGCTTGCCGGAGAG GTAAACCTTGTAGAGTGGCTCAAGAACAAGGTGACCAACAGGGACTACGAGEST: gi|29129799|gb|CB380503.1|CB380503
genomic: AGATCATCTCCGGCCGAAGCCCCGTCGACTACGCCAGGCCTGCCGGAGAGgtcagtgcgg ... gctgctacagGTAAACCTTGTAGAGTGGCTCAAGAACAAGGTGACCAACAGGGACTACGAG
EST: AGATCATCTCCGGCCGAAGCCCCGTCGACTACGCCAGGCCTGCCGGAGAG GTAAACCTTGTAGAGTGGCTCAAGAACAAGGTGACCAACAGGGACTACGAGEST: gi|71439998|gb|DR821048.1|DR821048
genomic: AGATCATCTCCGGCCGAAGCCCCGTCGACTACGCCAGGCCTGCCGGAGAGgtcagtgcgg ... gctgctacagGTAAACCTTGTAGAGTGGCTCAAGAACAAGGTGACCAACAGGGACTACGAG
EST: AGATCATCTCCGGCCGAAGCCCCGTCGACTACGCCAGGCCTGCCGGAGAG GTAAACCTTGTAGAGTGGCTCAAGAACAAGGTGACCAACAGGGACTACGAGEST: gi|71308861|gb|DR790680.1|DR790680
genomic: AGATCATCTCCGGCCGAAGCCCCGTCGACTACGCCAGGCCTGCCGGAGAGgtcagtgcgg ... gctgctacagGTAAACCTTGTAGAGTGGCTCAAGAACAAGGTGACCAACAGGGACTACGAG
EST: CCCGTCGACTACGCCAGGCCTGCCGGAGAG GTAAACCTTGTAGAGTGGCTCAAGAACAAGGTGACCAACAGGGACTACGAG
genomic: CCCGTCGACTACGCCAGGCCTGCCGGAGAGgtcagtgcgg ... gctgctacagGTAAACCTTGTAGAGTGGCTCAAGAACAAGGTGACCAACAGGGACTACGAG
atcaattcaacgaacgaagcaacgggatcctgatcctgctgtgctgctgctacagGTAAACCTTGTAGAGTGGCTCAAGAACAAGGTGACCAACAGGGACTACGAGGCCATCGTGGACCCGAAGCTGCCGGAGAAGCCGTCCTCCAAGGCTCTCA
tcctgat putative branch site (score: 56)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagtgcggcgtttgtggttgatcaattcaacgaacgaagcaacgggatcctgatcctgctgtgctgctgctacagGTAAACCTTGTAGAGTGGCTCAAGAACAAGGTGACCAACAGGGACTACGAGGCCATCGTGGACCCGAAGCTGCCGGAGAAGCCGTCCTCCAAGGCTCTCA
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