1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtgagatcttgctatagcttttctttatttctctctagcctctttatttgtttacgttattttcatgaactaatgggctgcatctttttttcagGGTGGCACCAATTACAACTTCTCAGCCTGAAGGACTTCCTGCACA
species | Zea mays |
transcript | GRMZM2G143462_T06 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ACAAGGCAGGCACCTCCTCTAGAGGCCCCACAACAAGCTCCTCAACCCCC GGTGGCACCAATTACAACTTCTCAGCCTGAAGGACTTCCTGCACAEST: gi|74242202|gb|DT650116.1|DT650116
genomic: ACAAGGCAGGCACCTCCTCTAGAGGCCCCACAACAAGCTCCTCAACCCCCgtgagatctt ... tttttttcagGGTGGCACCAATTACAACTTCTCAGCCTGAAGGACTTCCTGCACA
EST: ACAAGGCAGGCACCTCCTCTAGAGGCCCCACAACAAGCTCCTCAACCCCC GGTGGCACCAATTACAACTTCTCAGCCTGAAGGACTTCCTGCACAEST: gi|148995692|gb|EE034914.2|EE034914
genomic: ACAAGGCAGGCACCTCCTCTAGAGGCCCCACAACAAGCTCCTCAACCCCCgtgagatctt ... tttttttcagGGTGGCACCAATTACAACTTCTCAGCCTGAAGGACTTCCTGCACA
EST: ACAAGGCAGGCACCTCCTCTAGAGGCCCCACAACAAGCTCCTCAACCCCC GGTGGCACCAATTACAACTTCTCAGCCTGAAGGACTTCCTGCACAEST: gi|89759371|gb|DY688230.1|DY688230
genomic: ACAAGGCAGGCACCTCCTCTAGAGGCCCCACAACAAGCTCCTCAACCCCCgtgagatctt ... tttttttcagGGTGGCACCAATTACAACTTCTCAGCCTGAAGGACTTCCTGCACA
EST: ACAAGGCAGGCACCTCCTCTAGAGGCCCCACAACAAGCTCCTCAACCCCC GGTGGCACCAATTACAACTTCTCAGCCTGAAGGACTTCCTGCACAEST: gi|71764241|gb|DR962178.1|DR962178
genomic: ACAAGGCAGGCACCTCCTCTAGAGGCCCCACAACAAGCTCCTCAACCCCCgtgagatctt ... tttttttcagGGTGGCACCAATTACAACTTCTCAGCCTGAAGGACTTCCTGCACA
EST: GCTCCTCAACCCCC GGTGGCACCAATTACAACTTCTCAGCCTGAAGGACTTCCTGCACAEST: gi|30306905|gb|CD001578.1|CD001578
genomic: GCTCCTCAACCCCCgtgagatctt ... tttttttcagGGTGGCACCAATTACAACTTCTCAGCCTGAAGGACTTCCTGCACA
EST: ACAAGGCAGGCACCTCCTCTAGAGGCCCCACAACAAGCTCCTCAACCCCC GGTGGCACCAATTACAACTTCTCAGCCTGAAGGACTTCCTGCACAEST: gi|32936801|gb|CF041620.1|CF041620
genomic: ACAAGGCAGGCACCTCCTCTAGAGGCCCCACAACAAGCTCCTCAACCCCCgtgagatctt ... tttttttcagGGTGGCACCAATTACAACTTCTCAGCCTGAAGGACTTCCTGCACA
EST: GGCAGGCACCTCCTCTAGAGGCCCCACAACAAGCTCCTCAACCCCC GGTGGCACCAATTACAACTTCTCAGCCTGAAGGACTTCCTGCACAEST: gi|211488314|gb|FK957004.1|FK957004
genomic: GGCAGGCACCTCCTCTAGAGGCCCCACAACAAGCTCCTCAACCCCCgtgagatctt ... tttttttcagGGTGGCACCAATTACAACTTCTCAGCCTGAAGGACTTCCTGCACA
EST: ACAAGGCAGGCACCTCCTCTAGAGGCCCCACAACAAGCTCCTCAACCCCC GGTGGCACCAATTACAACTTCTCAGCCTGAAGGACTTCCTGCACAEST: gi|148947026|gb|EC892323.2|EC892323
genomic: ACAAGGCAGGCACCTCCTCTAGAGGCCCCACAACAAGCTCCTCAACCCCCgtgagatctt ... tttttttcagGGTGGCACCAATTACAACTTCTCAGCCTGAAGGACTTCCTGCACA
EST: ACAAGGCAGGCACCTCCTCTAGAGGCCCCACAACAAGCTCCTCAACCCCC GGTGGCACCAATTACAACTTCTCAGCCTGAAGGACTTCCTGCACAEST: gi|89758471|gb|DY687642.1|DY687642
genomic: ACAAGGCAGGCACCTCCTCTAGAGGCCCCACAACAAGCTCCTCAACCCCCgtgagatctt ... tttttttcagGGTGGCACCAATTACAACTTCTCAGCCTGAAGGACTTCCTGCACA
EST: ACAAGGCAGGCACCTCCTCTAGAGGCCCCACAACAAGCTCCTCAACCCCC GGTGGCACCAATTACAACTTCTCAGCCTGAAGGACTTCCTGCACAEST: gi|89761592|gb|DY689541.1|DY689541
genomic: ACAAGGCAGGCACCTCCTCTAGAGGCCCCACAACAAGCTCCTCAACCCCCgtgagatctt ... tttttttcagGGTGGCACCAATTACAACTTCTCAGCCTGAAGGACTTCCTGCACA
EST: ACAAGGCAGGCACCTCCTCTAGAGGCCCCACAACAAGCTCCTCAACCCCC GGTGGCACCAATTACAACTTCTCAGCCTGAAGGACTTCCTGCACAEST: gi|9731840|gb|BE510592.1|BE510592
genomic: ACAAGGCAGGCACCTCCTCTAGAGGCCCCACAACAAGCTCCTCAACCCCCgtgagatctt ... tttttttcagGGTGGCACCAATTACAACTTCTCAGCCTGAAGGACTTCCTGCACA
EST: ACAAGGCAGGCACCTCCTCTAGAGGCCCCACAACAAGCTCCTCAACCCCC GGTGGCACCAATTACAACTTCTCAGCCTGAAGGACTTCCTGCACAEST: gi|211394219|gb|FL229513.1|FL229513
genomic: ACAAGGCAGGCACCTCCTCTAGAGGCCCCACAACAAGCTCCTCAACCCCCgtgagatctt ... tttttttcagGGTGGCACCAATTACAACTTCTCAGCCTGAAGGACTTCCTGCACA
EST: GGCACCTCCTCTAGAGGCCCCACAACAAGCTCCTCAACCCCC GGTGGCACCAATTACAACTTCTCAGCCTGAAGGACTTCCTGCACAEST: gi|211394220|gb|FL229514.1|FL229514
genomic: GGCACCTCCTCTAGAGGCCCCACAACAAGCTCCTCAACCCCCgtgagatctt ... tttttttcagGGTGGCACCAATTACAACTTCTCAGCCTGAAGGACTTCCTGCACA
EST: ACAAGGCAGGCACCTCCTCTAGAGGCCCCACAACAAGCTCCTCAACCCCC GGTGGCACCAATTACAACTTCTCAGCCTGAAGGACTTCCTGCACAEST: gi|78111156|gb|DV529553.1|DV529553
genomic: ACAAGGCAGGCACCTCCTCTAGAGGCCCCACAACAAGCTCCTCAACCCCCgtgagatctt ... tttttttcagGGTGGCACCAATTACAACTTCTCAGCCTGAAGGACTTCCTGCACA
EST: ACAAGGCAGGCACCTCCTCTAGAGGCCCCACAACAAGCTCCTCAACCCCC GGTGGCACCAATTACAACTTCTCAGCCTGAAGGACTTCCTGCACAEST: gi|148999208|gb|EE036127.2|EE036127
genomic: ACAAGGCAGGCACCTCCTCTAGAGGCCCCACAACAAGCTCCTCAACCCCCgtgagatctt ... tttttttcagGGTGGCACCAATTACAACTTCTCAGCCTGAAGGACTTCCTGCACA
EST: ACAAGGCAGGCACCTCCTCTAGAGGCCCCACAACAAGCTCCTCAACCCCC GGTGGCACCAATTACAACTTCTCAGCCTGAAGGACTTCCTGCACAEST: gi|211491194|gb|FK957015.1|FK957015
genomic: ACAAGGCAGGCACCTCCTCTAGAGGCCCCACAACAAGCTCCTCAACCCCCgtgagatctt ... tttttttcagGGTGGCACCAATTACAACTTCTCAGCCTGAAGGACTTCCTGCACA
EST: ACAAGGCAGGCACCTCCTCTAGAGGCCCCACAACAAGCTCCTCAACCCCC GGTGGCACCAATTACAACTTCTCAGCCTGAAGGACTTCCTGCACAEST: gi|93280956|gb|EB673220.1|EB673220
genomic: ACAAGGCAGGCACCTCCTCTAGAGGCCCCACAACAAGCTCCTCAACCCCCgtgagatctt ... tttttttcagGGTGGCACCAATTACAACTTCTCAGCCTGAAGGACTTCCTGCACA
EST: ACAAGGCAGGCACCTCCTCTAGAGGCCCCACAACAAGCTCCTCAACCCCC GGTGGCACCAATTACAACTTCTCAGCCTGAAGGACTTCCTGCACAEST: gi|149095756|gb|EE181396.2|EE181396
genomic: ACAAGGCAGGCACCTCCTCTAGAGGCCCCACAACAAGCTCCTCAACCCCCgtgagatctt ... tttttttcagGGTGGCACCAATTACAACTTCTCAGCCTGAAGGACTTCCTGCACA
EST: ACAAGGCAGGCACCTCCTCTAGAGGCCCCACAACAAGCTCCTCAACCCCC GGTGGCACCAATTACAACTTCTCAGCCTGAAGGACTTCCTGCACAEST: gi|71771539|gb|DR969476.1|DR969476
genomic: ACAAGGCAGGCACCTCCTCTAGAGGCCCCACAACAAGCTCCTCAACCCCCgtgagatctt ... tttttttcagGGTGGCACCAATTACAACTTCTCAGCCTGAAGGACTTCCTGCACA
EST: ACAAGGCAGGCACCTCCTCTAGAGGCCCCACAACAAGCTCCTCAACCCCC GGTGGCACCAATTACAACTTCTCAGCCTGAAGGACTTCCTGCACAEST: gi|32805412|gb|CD957648.1|CD957648
genomic: ACAAGGCAGGCACCTCCTCTAGAGGCCCCACAACAAGCTCCTCAACCCCCgtgagatctt ... tttttttcagGGTGGCACCAATTACAACTTCTCAGCCTGAAGGACTTCCTGCACA
EST: ACAAGGCAGGCACCTCCTCTAGAGGCCCCACAACAAGCTCCTCAACCCCC GGTGGCACCAATTACAACTTCTCAGCCTGAAGGACTTCCTGCACAEST: gi|76912415|gb|DV164721.1|DV164721
genomic: ACAAGGCAGGCACCTCCTCTAGAGGCCCCACAACAAGCTCCTCAACCCCCgtgagatctt ... tttttttcagGGTGGCACCAATTACAACTTCTCAGCCTGAAGGACTTCCTGCACA
EST: ACAAGGCAGGCACCTCCTCTAGAGGCCCCACAACAAGCTCCTCAACCCCC GGTGGCACCAATTACAACTTCTCAGCCTGAAGGACTTCCTGCACA
genomic: ACAAGGCAGGCACCTCCTCTAGAGGCCCCACAACAAGCTCCTCAACCCCCgtgagatctt ... tttttttcagGGTGGCACCAATTACAACTTCTCAGCCTGAAGGACTTCCTGCACA
ctctttatttgtttacgttattttcatgaactaatgggctgcatctttttttcagGGTGGCACCAATTACAACTTCTCAGCCTGAAGGACTTCCTGCACA
aactaat putative branch site (score: 277)
ctgcatctttttttc putative PPT
tatttgttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagatcttgctatagcttttctttatttctctctagcctctttatttgtttacgttattttcatgaactaatgggctgcatctttttttcagGGTGGCACCAATTACAACTTCTCAGCCTGAAGGACTTCCTGCACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG