1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaaacaaaactataattaactgcctcttgatgttagaaacttttaaactgtccacaaagttatgcaatatgaccatactctatcatgtcagGCTGCAGTAGCACAGGCCAAACTAGCAAATCGGCTCTACCAGAAGAAATTCTCTGGCCCAAGGTGGGAGGCGTTGGCCAAGAAAGGTGCCAAGAAACAAA
species | Zea mays |
transcript | GRMZM2G134256_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AAATGCTTGACAAGATTGGAACACCTGAGGCCCTTGCCTTGAGAGGAAAG GCTGCAGTAGCACAGGCCAAACTAGCAAATCGGCTTTACCAGAAGAAATTCEST: gi|40335818|gb|CK369888.1|CK369888
genomic: AAATGCTTGACAAGATTGGAACACCTGAGGCCCTTGCCTTGAGAGGAAAGgtaaacaaaa ... atcatgtcagGCTGCAGTAGCACAGGCCAAACTAGCAAATCGGCTCTACCAGAAGAAATTC
EST: AAATGCTTGACAAGATTGGAACACCTGAGGCCCTTGCCTTGAGAGGAAAG GCTGCAGTAGCGCAGGCCAAACTAGCAAATCGGCTCTACCAGAAGAAATTCEST: gi|60357531|gb|DN224504.1|DN224504
genomic: AAATGCTTGACAAGATTGGAACACCTGAGGCCCTTGCCTTGAGAGGAAAGgtaaacaaaa ... atcatgtcagGCTGCAGTAGCACAGGCCAAACTAGCAAATCGGCTCTACCAGAAGAAATTC
EST: AAATGCTTGACAAGATTGGAACACCTGAGGCCCTTGCCTTGAGAGGAAAG GCTGCAGTAGCACAGGCCAAACTAGCAAATCGGCTCTACCAGAAGAAATTCEST: gi|67033538|gb|CO462287.1|CO462287
genomic: AAATGCTTGACAAGATTGGAACACCTGAGGCCCTTGCCTTGAGAGGAAAGgtaaacaaaa ... atcatgtcagGCTGCAGTAGCACAGGCCAAACTAGCAAATCGGCTCTACCAGAAGAAATTC
EST: AAATGCTTGACAAGATTGGAACACCTGAGGCCCTTGCCTTGAGAGGAAAG GCTGCAGTAGCGCAGGCCAAACTAGCAAATCGGCTCTACCAGAAGAAATTCEST: gi|32850249|gb|CD989930.1|CD989930
genomic: AAATGCTTGACAAGATTGGAACACCTGAGGCCCTTGCCTTGAGAGGAAAGgtaaacaaaa ... atcatgtcagGCTGCAGTAGCACAGGCCAAACTAGCAAATCGGCTCTACCAGAAGAAATTC
EST: AAATGCTTGACAAGATTGGAACACCTGAGGCCCTTGCCTTGAGAGGAAAG GCTGCAGTAGCGCAGGCCAAACTAGCAAATCGGCTCTACCAGAAGAAATTCEST: gi|32907897|gb|CF012710.1|CF012710
genomic: AAATGCTTGACAAGATTGGAACACCTGAGGCCCTTGCCTTGAGAGGAAAGgtaaacaaaa ... atcatgtcagGCTGCAGTAGCACAGGCCAAACTAGCAAATCGGCTCTACCAGAAGAAATTC
EST: AAATGCTTGACAAGATTGGAACACCTGAGGCCCTTGCCTTGAGAGGAAAG GCTGCAGTAGCGCAGGCCAAACTAGCAAATCGGCTCTACCAGAAGAAATTCEST: gi|6626605|gb|AW258137.1|AW258137
genomic: AAATGCTTGACAAGATTGGAACACCTGAGGCCCTTGCCTTGAGAGGAAAGgtaaacaaaa ... atcatgtcagGCTGCAGTAGCACAGGCCAAACTAGCAAATCGGCTCTACCAGAAGAAATTC
EST: AAATGCTTGACAAGATTGGAACACCTGAGGCCCTTGCCTTGAGAGGAAAG GCTGCAGTAGCGCAGGCCAAACTAGCAAATCGGCTCTACCAGAAGAAATTCEST: gi|32850213|gb|CD989894.1|CD989894
genomic: AAATGCTTGACAAGATTGGAACACCTGAGGCCCTTGCCTTGAGAGGAAAGgtaaacaaaa ... atcatgtcagGCTGCAGTAGCACAGGCCAAACTAGCAAATCGGCTCTACCAGAAGAAATTC
EST: AAATGCTTGACAAGATTGGAACACCTGAGGCCCTTGCCTTGAGAGGAAAG GCTGCAGTAGCGCAGGCCAAACTAGCAAATCGGCTCTACCAGAAGAAATTCEST: gi|5928815|gb|AW056107.1|AW056107
genomic: AAATGCTTGACAAGATTGGAACACCTGAGGCCCTTGCCTTGAGAGGAAAGgtaaacaaaa ... atcatgtcagGCTGCAGTAGCACAGGCCAAACTAGCAAATCGGCTCTACCAGAAGAAATTC
EST: AAATGCTTGACAAGATTGGAACACCTGAGGCCCTTGCCTTGAGAGGAAAG GCTGCAGTAGCGCAGGCCAAACTAGCAAATCGGCTCTACCAGAAGAAATTCEST: gi|32850218|gb|CD989899.1|CD989899
genomic: AAATGCTTGACAAGATTGGAACACCTGAGGCCCTTGCCTTGAGAGGAAAGgtaaacaaaa ... atcatgtcagGCTGCAGTAGCACAGGCCAAACTAGCAAATCGGCTCTACCAGAAGAAATTC
EST: AATGCTTGACAAGATT-GAACCACTTGAGGCCC-TGCCTTGAGAGGAAAG GCTGCAGTAGCGCAGGCCAAACTAGCAAATCGGCTCTACCAAAAGAAATTCEST: gi|37387548|gb|CF630971.1|CF630971
genomic: AATGCTTGACAAGATTGGAA-CACCTGAGGCCCTTGCCTTGAGAGGAAAGgtaaacaaaa ... atcatgtcagGCTGCAGTAGCACAGGCCAAACTAGCAAATCGGCTCTACCAGAAGAAATTC
EST: TGCTTGACAAGATTGGAACACCTGAGGCCCTTGCCTTGAGAGGAAAG GCTGCAGTAGCGCAGGCCAAACTAGCAAATCGGCTCTACCAGAAGAAATTCEST: gi|166532676|gb|EG182361.1|EG182361
genomic: TGCTTGACAAGATTGGAACACCTGAGGCCCTTGCCTTGAGAGGAAAGgtaaacaaaa ... atcatgtcagGCTGCAGTAGCACAGGCCAAACTAGCAAATCGGCTCTACCAGAAGAAATTC
EST: ATTGGAACACCTGAGGCCCTTGCCTTGAGAGGAAAG GCTGCAGTAGCGCAGGCCAAACTAGCAAATCGGCTCTACCAGAAGAAATTCEST: gi|32943331|gb|CF048150.1|CF048150
genomic: ATTGGAACACCTGAGGCCCTTGCCTTGAGAGGAAAGgtaaacaaaa ... atcatgtcagGCTGCAGTAGCACAGGCCAAACTAGCAAATCGGCTCTACCAGAAGAAATTC
EST: GCCCTTGCCTTGAGAGGAAAG GCTGCAGTAGCGCAGGCCAAACTAGCAAATCGGCTCTACCAGAAGAAATTCEST: gi|60354154|gb|DN221127.1|DN221127
genomic: GCCCTTGCCTTGAGAGGAAAGgtaaacaaaa ... atcatgtcagGCTGCAGTAGCACAGGCCAAACTAGCAAATCGGCTCTACCAGAAGAAATTC
EST: AAATGCTTGACAAGATTGGAACACCTGAGGCCCTTGCCTTGAGAGGAAAG GCTGCAGTAGCACAGGCCAAACTAGCAAATCGGCTCTACCAGAAGAAATTCEST: gi|60357634|gb|DN224607.1|DN224607
genomic: AAATGCTTGACAAGATTGGAACACCTGAGGCCCTTGCCTTGAGAGGAAAGgtaaacaaaa ... atcatgtcagGCTGCAGTAGCACAGGCCAAACTAGCAAATCGGCTCTACCAGAAGAAATTC
EST: TTGAGAGG-AAG GCTGCAGTAGCACAGGCCAAACTAGCAAATCGGCTCTACCAGAAGAAATTCEST: gi|21432436|gb|BQ547926.1|BQ547926
genomic: TTGAGAGGAAAGgtaaacaaaa ... atcatgtcagGCTGCAGTAGCACAGGCCAAACTAGCAAATCGGCTCTACCAGAAGAAATTC
EST: GAGGCCCTTGCCTTGAGAGGAAAG GCTGCAGTAGCGCAGGCCAAACTAGCAAATCGGCTCTACCAGAAGAAATTCEST: gi|60400687|gb|DN233494.1|DN233494
genomic: GAGGCCCTTGCCTTGAGAGGAAAGgtaaacaaaa ... atcatgtcagGCTGCAGTAGCACAGGCCAAACTAGCAAATCGGCTCTACCAGAAGAAATTC
EST: GAGGCCCTTGCCTTGAGAGGAAAG GCTGCAGTAGCACAGGCCAAACTAGCAAATCGGCTCTACCAGAAGAAATTCEST: gi|211497584|gb|FL092454.1|FL092454
genomic: GAGGCCCTTGCCTTGAGAGGAAAGgtaaacaaaa ... atcatgtcagGCTGCAGTAGCACAGGCCAAACTAGCAAATCGGCTCTACCAGAAGAAATTC
EST: AAATGCTTGACAAGATTGGAACACCTGAGGCCCTTGCCTTGAGAGGAAAG GCTGCAGTAGCACAGGCCAAACTAGCAAATCGGCTCTACCAGAAGAAATTCEST: gi|37383227|gb|CF628606.1|CF628606
genomic: AAATGCTTGACAAGATTGGAACACCTGAGGCCCTTGCCTTGAGAGGAAAGgtaaacaaaa ... atcatgtcagGCTGCAGTAGCACAGGCCAAACTAGCAAATCGGCTCTACCAGAAGAAATTC
EST: TGACAAGATTGGAACACCTGAGGCCCTTGCCTTGAGAGGAAAG GCTGCAGTAGCGCAGGCCAAACTAGCAAATCGGCTCTACCAGAAGAAATTC
genomic: TGACAAGATTGGAACACCTGAGGCCCTTGCCTTGAGAGGAAAGgtaaacaaaa ... atcatgtcagGCTGCAGTAGCACAGGCCAAACTAGCAAATCGGCTCTACCAGAAGAAATTC
aaacttttaaactgtccacaaagttatgcaatatgaccatactctatcatgtcagGCTGCAGTAGCACAGGCCAAACTAGCAAATCGGCTCTACCAGAAGAAATTCTCTGGCCCAAGGTGGGAGGCGTTGGCCAAGAAAGGTGCCAAGAAACAAA
ctctatc CT-rich tract
tttaaact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaacaaaactataattaactgcctcttgatgttagaaacttttaaactgtccacaaagttatgcaatatgaccatactctatcatgtcagGCTGCAGTAGCACAGGCCAAACTAGCAAATCGGCTCTACCAGAAGAAATTCTCTGGCCCAAGGTGGGAGGCGTTGGCCAAGAAAGGTGCCAAGAAACAAA
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