1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tattaacatgccaaaatggataattatggcattctttcttgtggctagcgatattttactgcaattacatcttctgaattgaactcctatttccttacagGTCAGTTGTATTGATTTGCATAGCCGTGGTGCTGCTTGTTCTTGTGTTCCTTGGATACG
species | Zea mays |
transcript | GRMZM2G130868_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GTGAAGACAGCAGAAAATTACAAAATGATAAGAAAAGTTCTCCATATCAT GTCAGTTGTATTGATTTGCATAGCCGTGGTGCTGCTTGTTCTTGTGTTCCTEST: gi|33100423|gb|CF060383.1|CF060383
genomic: GTGAAGACAGCAGAAAATTACAAAATGATAAGAAAAGTTCTCCATATCATgtatgtttca ... ttccttacagGTCAGTTGTATTGATTTGCATAGCCGTGGTGCTGCTTGTTCTTGTGTTCCT
EST: GTGAAGACAGCAGAAAATTACAAAATGATAAGAAAAGTTCTCCATGTCAT GTCGGTTGTATTGATTTGCATAGCCGTGGTGCTGCTTGTTCTTGTGTTCCTEST: gi|211182625|gb|FK950421.1|FK950421
genomic: GTGAAGACAGCAGAAAATTACAAAATGATAAGAAAAGTTCTCCATATCATgtatgtttca ... ttccttacagGTCAGTTGTATTGATTTGCATAGCCGTGGTGCTGCTTGTTCTTGTGTTCCT
EST: GTGAAGACAGCAGAAAATTACAAAATGATAAGAAAAGTTCTCCATATCAT GTCAGTTGTATTGATTTGCATAGCCGTGGTGCTGCTTGTTCTTGTGTTCCT
genomic: GTGAAGACAGCAGAAAATTACAAAATGATAAGAAAAGTTCTCCATATCATgtatgtttca ... ttccttacagGTCAGTTGTATTGATTTGCATAGCCGTGGTGCTGCTTGTTCTTGTGTTCCT
tagcgatattttactgcaattacatcttctgaattgaactcctatttccttacagGTCAGTTGTATTGATTTGCATAGCCGTGGTGCTGCTTGTTCTTGTGTTCCTTGGATACG
ctcctatttccttac CT-rich tract
atattttact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tattaacatgccaaaatggataattatggcattctttcttgtggctagcgatattttactgcaattacatcttctgaattgaactcctatttccttacagGTCAGTTGTATTGATTTGCATAGCCGTGGTGCTGCTTGTTCTTGTGTTCCTTGGATACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - -acatgcc
- - - - - - - - - - - - - - gcattct
- - - - - - - - - - - - - - - - - - - -tgtggct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - tactgca