1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...tttggcctcaattttatggctcgtttttgctatactaatacatctggtcaataacttttatgttttagttcacaactcctaaaaacgctctcttccccagGTTCGAGCATCGGAATATAATAATGTAAGGAGCCAGCTTAGTGCGATCAACAGGAAGCAAAGTGGGAG
species | Zea mays |
transcript | GRMZM2G128995_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TCGTCGGCAGCATACAGTCACAGGTTGCCAAGATCGAGGATGACATGAAG GTYCGAGCATCAGAATATAATAATGTEST: gi|19351863|gb|BM896395.1|BM896395
genomic: TCGTCGGCAGCATACAGTCACAGGTTGCCAAGATCGAGGATGACATGAAGgtttgtttgc ... tcttccccagGTTCGAGCATCGGAATATAATAATGT
EST: TCGTCGGCAGCATACAGTCACAGGTTGCCAAGATCGAGGATGACATGAAG GTTCGAGCATCAGAATATAATAATGTAAGGAGCCAGCTTAGTGCGATCAACEST: gi|211045930|gb|FL419466.1|FL419466
genomic: TCGTCGGCAGCATACAGTCACAGGTTGCCAAGATCGAGGATGACATGAAGgtttgtttgc ... tcttccccagGTTCGAGCATCGGAATATAATAATGTAAGGAGCCAGCTTAGTGCGATCAAC
EST: GTCGGCAGCATACAGTCACAGGTTGCCAGAGATCGAGGCATGACATGAAG GTTCGAGCATCAGAATATAATAATGTAAGGAGCCAGCTTAGTGGGATCAACEST: gi|87153287|gb|DY398076.1|DY398076
genomic: GTCGGCAGCATACAGTCACAGGTTGCCA-AGATCGAGG-ATGACATGAAGgtttgtttgc ... tcttccccagGTTCGAGCATCGGAATATAATAATGTAAGGAGCCAGCTTAGTGCGATCAAC
EST: TCGTCGGCAGCATACAGTCACAGGTTGCCAAGATCGAGGATGACATGAAG GTTCGAGCATCAGAATATAATAATGTAAGGAGCCAGCTTAGTGCGATCAACEST: gi|31363830|gb|CD448185.1|CD448185
genomic: TCGTCGGCAGCATACAGTCACAGGTTGCCAAGATCGAGGATGACATGAAGgtttgtttgc ... tcttccccagGTTCGAGCATCGGAATATAATAATGTAAGGAGCCAGCTTAGTGCGATCAAC
EST: TCGTCGGCAGCATACAGTCACAGGTTGCCAAGATCGAGGATGACATGAAG GTTCCAGCATCACAATATAATAATGTAAGGAGCCAGCTTAGTGCGATCAACEST: gi|71427970|gb|DR809020.1|DR809020
genomic: TCGTCGGCAGCATACAGTCACAGGTTGCCAAGATCGAGGATGACATGAAGgtttgtttgc ... tcttccccagGTTCGAGCATCGGAATATAATAATGTAAGGAGCCAGCTTAGTGCGATCAAC
EST: TCGTCGGCAGCATACAGTCACAGGTTGCCAAGATCGAGGATGACATGAAG GTTCGAGCATCGGAATATAATAATGTAAGGAGCCAGCTTAGTGCGATCAACEST: gi|148954149|gb|EC899548.2|EC899548
genomic: TCGTCGGCAGCATACAGTCACAGGTTGCCAAGATCGAGGATGACATGAAGgtttgtttgc ... tcttccccagGTTCGAGCATCGGAATATAATAATGTAAGGAGCCAGCTTAGTGCGATCAAC
EST: TCGTCGGCAGCATACAGTCACAGGTTGCCAAGATCGAGGATGACATGAAG GTTCGAGCATCGGAATATAATAATGTAAGGAGCCAGCTTAGTGCGATCAACEST: gi|211327966|gb|FL399630.1|FL399630
genomic: TCGTCGGCAGCATACAGTCACAGGTTGCCAAGATCGAGGATGACATGAAGgtttgtttgc ... tcttccccagGTTCGAGCATCGGAATATAATAATGTAAGGAGCCAGCTTAGTGCGATCAAC
EST: TCGTCGGCAGCATACAGTCACAGGTTGCCAAGATCGAGGATGACATGAAG GTTCGAGCATCGGAATATAATAATGTEST: gi|31348626|gb|CD432983.1|CD432983
genomic: TCGTCGGCAGCATACAGTCACAGGTTGCCAAGATCGAGGATGACATGAAGgtttgtttgc ... tcttccccagGTTCGAGCATCGGAATATAATAATGT
EST: TCGTCGGCAGCATACAGTCACAGGTTGCCAAGATCGAGGATGACATGAAG GTTCGAGCATCAGAATATAATAATGTAAGGAGCCAGCTTAGTGCGATCAACEST: gi|211532950|gb|FL381081.1|FL381081
genomic: TCGTCGGCAGCATACAGTCACAGGTTGCCAAGATCGAGGATGACATGAAGgtttgtttgc ... tcttccccagGTTCGAGCATCGGAATATAATAATGTAAGGAGCCAGCTTAGTGCGATCAAC
EST: TCGTCGGCAGCATACAGTCACAGGTTGCCAAGATCGAGGATGACATGAAG GTTCGAGCATCGGAATATAATAATGTAAGGAGCCAGCTTAGTGCGATCAACEST: gi|211065673|gb|FL393994.1|FL393994
genomic: TCGTCGGCAGCATACAGTCACAGGTTGCCAAGATCGAGGATGACATGAAGgtttgtttgc ... tcttccccagGTTCGAGCATCGGAATATAATAATGTAAGGAGCCAGCTTAGTGCGATCAAC
EST: TCGTCGGCAGCATACAGTCACAGGTTGCCAAGATCGAGGATGACATGAAG GTTCGAGCATCAGAATATAATAATGTAAGGAGCCAGCTTAGTGCGATCAACEST: gi|19351525|gb|BM896057.1|BM896057
genomic: TCGTCGGCAGCATACAGTCACAGGTTGCCAAGATCGAGGATGACATGAAGgtttgtttgc ... tcttccccagGTTCGAGCATCGGAATATAATAATGTAAGGAGCCAGCTTAGTGCGATCAAC
EST: TCGTCGGCAGCATACAGTCACAGGTTGCCAAGATCGAGGATGACATGAAG GTTCGAGCATCAGAATATAATAATGCAAGGAGCCAGCTTAGTGCGATCAACEST: gi|60358961|gb|DN225934.1|DN225934
genomic: TCGTCGGCAGCATACAGTCACAGGTTGCCAAGATCGAGGATGACATGAAGgtttgtttgc ... tcttccccagGTTCGAGCATCGGAATATAATAATGTAAGGAGCCAGCTTAGTGCGATCAAC
EST: TCGTCGGCAGCATACAGTCACAGGTTGCCAAGATCGAGGATGACATGAAG GTTCGAGCATCGGAATATAATAATGTAAGGAGCCAGCTTAGTGCGATCAACEST: gi|67032136|gb|CO460885.1|CO460885
genomic: TCGTCGGCAGCATACAGTCACAGGTTGCCAAGATCGAGGATGACATGAAGgtttgtttgc ... tcttccccagGTTCGAGCATCGGAATATAATAATGTAAGGAGCCAGCTTAGTGCGATCAAC
EST: TCGTCGGCAGCATACAGTCACAGGTTGCCAAGATCGAGGATGACATGAAG GTTCGAGCATCAGAATATAATAATGTAAGGAGCCAGCTTAGTGCGATCAACEST: gi|148968978|gb|EE019672.2|EE019672
genomic: TCGTCGGCAGCATACAGTCACAGGTTGCCAAGATCGAGGATGACATGAAGgtttgtttgc ... tcttccccagGTTCGAGCATCGGAATATAATAATGTAAGGAGCCAGCTTAGTGCGATCAAC
EST: TCGTCGGCAGCATACAGTCACAGGTTGCCAAGATCGAGGATGACATGAAG GTTCGAGCATCGGAATATAATAATGTAAGGAGCCAGCTTAGTGCGATCAACEST: gi|22491457|gb|BU051380.1|BU051380
genomic: TCGTCGGCAGCATACAGTCACAGGTTGCCAAGATCGAGGATGACATGAAGgtttgtttgc ... tcttccccagGTTCGAGCATCGGAATATAATAATGTAAGGAGCCAGCTTAGTGCGATCAAC
EST: TCGTCGGCAGCATACAGTCACAGGTTGCCAAGATCGAGGATGACATGAAG GTTCGAGCATCAGAATATAATAATGTAAGGAGCCAGCTTAGTGCGATCAACEST: gi|211452191|gb|FL398498.1|FL398498
genomic: TCGTCGGCAGCATACAGTCACAGGTTGCCAAGATCGAGGATGACATGAAGgtttgtttgc ... tcttccccagGTTCGAGCATCGGAATATAATAATGTAAGGAGCCAGCTTAGTGCGATCAAC
EST: TCGTCGGCAGCATACAGTCACAGGTTGCCAAGATCGAGGATGACATGAAG GTTCGAGCATCGGAATATAATAATGTAAGGAGCCAGCTTAGTGCGATCAACEST: gi|211452273|gb|FL403779.1|FL403779
genomic: TCGTCGGCAGCATACAGTCACAGGTTGCCAAGATCGAGGATGACATGAAGgtttgtttgc ... tcttccccagGTTCGAGCATCGGAATATAATAATGTAAGGAGCCAGCTTAGTGCGATCAAC
EST: TCGTCGGCAGCATACAGTCACAGGTTGCCAAGATCGAGGATGACATGAAG GNTCGAGCATCGGAATATAATAATGTAAGGAGCCAGCTTEST: gi|67018576|gb|CO447325.1|CO447325
genomic: TCGTCGGCAGCATACAGTCACAGGTTGCCAAGATCGAGGATGACATGAAGgtttgtttgc ... tcttccccagGTTCGAGCATCGGAATATAATAATGTAAGGAGCCAGCTT
EST: TCGTCGGCAGCATACAGTCACAGGTTGCCAAGATCGAGGATGACATGAAG GTTCGAGCATCGGAATATAATAATGTAAGGAGCCAGCTTAGTGCGATCAACEST: gi|149010225|gb|EE042044.2|EE042044
genomic: TCGTCGGCAGCATACAGTCACAGGTTGCCAAGATCGAGGATGACATGAAGgtttgtttgc ... tcttccccagGTTCGAGCATCGGAATATAATAATGTAAGGAGCCAGCTTAGTGCGATCAAC
EST: TCGTCGGCAGCATACAGTCACAGGTTGCCAAGATCGAGGATGACATGAAG GTTCGAGCATCGGAATATAATAATGTAAGGAGCCAGCTTAGTGCGATCAACEST: gi|211413494|gb|FL407160.1|FL407160
genomic: TCGTCGGCAGCATACAGTCACAGGTTGCCAAGATCGAGGATGACATGAAGgtttgtttgc ... tcttccccagGTTCGAGCATCGGAATATAATAATGTAAGGAGCCAGCTTAGTGCGATCAAC
EST: TCGTCGGCAGCATACAGTCACAGGTTGCCAAGATCGAGGATGACATGAAG GTTCGAGCATCGGAATATAATAATGTAAGGAGCCAGCTTAGTGCGATCAACEST: gi|211288089|gb|FL387847.1|FL387847
genomic: TCGTCGGCAGCATACAGTCACAGGTTGCCAAGATCGAGGATGACATGAAGgtttgtttgc ... tcttccccagGTTCGAGCATCGGAATATAATAATGTAAGGAGCCAGCTTAGTGCGATCAAC
EST: TCGTCGGCAGCATACAGTCACAGGTTGCCAAGATCGAGGATGACATGAAG GTTCGAGCATCGGAATATAATAATGTAAGGAGCCAGCTTAGTGCGATCAEST: gi|149000734|gb|EE037952.2|EE037952
genomic: TCGTCGGCAGCATACAGTCACAGGTTGCCAAGATCGAGGATGACATGAAGgtttgtttgc ... tcttccccagGTTCGAGCATCGGAATATAATAATGTAAGGAGCCAGCTTAGTGCGATCA
EST: TCGTCGGCAGCATACAGTCACAGGTTGCCAAGATCGAGGATGACATGAAG GTTCGAGCATCGGAATATAATAATGTAAGGAGCCAGCTTAGTGCGATCAACEST: gi|149098811|gb|EE184822.2|EE184822
genomic: TCGTCGGCAGCATACAGTCACAGGTTGCCAAGATCGAGGATGACATGAAGgtttgtttgc ... tcttccccagGTTCGAGCATCGGAATATAATAATGTAAGGAGCCAGCTTAGTGCGATCAAC
EST: TCGTCGGCAGCATACAGTCACAGGTTGCCAAGATCGAGGATGACATGAAG GTTCGAGCATCGGAATATAATAATGTAAGGAGCCAGCTTAGTGCGATCAACEST: gi|211057980|gb|FL426570.1|FL426570
genomic: TCGTCGGCAGCATACAGTCACAGGTTGCCAAGATCGAGGATGACATGAAGgtttgtttgc ... tcttccccagGTTCGAGCATCGGAATATAATAATGTAAGGAGCCAGCTTAGTGCGATCAAC
EST: TCGTCGGCAGCATACAGTCACAGGTTGCCAAGATCGAGGATGACATGAAG GTTCGAGCATCGGAATATAATAATGTAAGGAGCCAGCTTAGTGCGATCAACEST: gi|211169417|gb|FL381630.1|FL381630
genomic: TCGTCGGCAGCATACAGTCACAGGTTGCCAAGATCGAGGATGACATGAAGgtttgtttgc ... tcttccccagGTTCGAGCATCGGAATATAATAATGTAAGGAGCCAGCTTAGTGCGATCAAC
EST: TCGTCGGCAGCATACAGTCACAGGTTGCCAAGATCGAGGATGACATGAAG GTTCGAGCATCAAAATATAATAATGTAAGGAGCCAGCTTAGTGCGATCA-CEST: gi|148963815|gb|EE014912.2|EE014912
genomic: TCGTCGGCAGCATACAGTCACAGGTTGCCAAGATCGAGGATGACATGAAGgtttgtttgc ... tcttccccagGTTCGAGCATCGGAATATAATAATGTAAGGAGCCAGCTTAGTGCGATCAAC
EST: TCGTCGGCAGCATACAGTCACAGGTTGCCAAGATCGAGGATGACATGAAG GTTCGAGCATCGGAATATAATAATGTAAGGAGCCAGCTTAGTGCGATCAACEST: gi|6095541|gb|AW120208.1|AW120208
genomic: TCGTCGGCAGCATACAGTCACAGGTTGCCAAGATCGAGGATGACATGAAGgtttgtttgc ... tcttccccagGTTCGAGCATCGGAATATAATAATGTAAGGAGCCAGCTTAGTGCGATCAAC
EST: TCGTCGGCAGCATACAGTCACAGGTTGCCAAGATCGAGGATGACATGAAG GTTCGAGCATCAGAATATAATAATGTAAGGAGCCAGCTTAGTGCGATCAACEST: gi|211319940|gb|FL427662.1|FL427662
genomic: TCGTCGGCAGCATACAGTCACAGGTTGCCAAGATCGAGGATGACATGAAGgtttgtttgc ... tcttccccagGTTCGAGCATCGGAATATAATAATGTAAGGAGCCAGCTTAGTGCGATCAAC
EST: TCGTCGGCAGCATACAGTCACAGGTTGCCAAGATCGAGGATGACATGAAG GTTCGAGCATCGGAATATAATAATGTAAGGAGCCNAGCTTAGTGCGATCAAEST: gi|78076482|gb|DV504916.1|DV504916
genomic: TCGTCGGCAGCATACAGTCACAGGTTGCCAAGATCGAGGATGACATGAAGgtttgtttgc ... tcttccccagGTTCGAGCATCGGAATATAATAATGTAAGGAGCC-AGCTTAGTGCGATCAA
EST: TCGTCGGCAGCATACAGTCACAGGTTGCCAAGATCGAGGATGACATGAAG GTTCGAGCATCGGAATATAATAATGTAAGGAGCCAEST: gi|211017234|gb|FL404253.1|FL404253
genomic: TCGTCGGCAGCATACAGTCACAGGTTGCCAAGATCGAGGATGACATGAAGgtttgtttgc ... tcttccccagGTTCGAGCATCGGAATATAATAATGTAAGGAGCCA
EST: TCGTCGGCAGCATACAGTCACAGGTTGCCAAGATCGAGGATGACATGAAG GTTCGAGCATCAGAATATAATAATGTAAGGAGCCAGCTTAGTGCGATCAACEST: gi|67013699|gb|CO442448.1|CO442448
genomic: TCGTCGGCAGCATACAGTCACAGGTTGCCAAGATCGAGGATGACATGAAGgtttgtttgc ... tcttccccagGTTCGAGCATCGGAATATAATAATGTAAGGAGCCAGCTTAGTGCGATCAAC
EST: TCGTCGGCAGCATACAGTCACAGGTTGCCAAGATCGAGGATGACATGAAG GTTCGAGCATCGGAATATAATAATGTAAGGAGCCAGCTTAGTGCGATCAAC
genomic: TCGTCGGCAGCATACAGTCACAGGTTGCCAAGATCGAGGATGACATGAAGgtttgtttgc ... tcttccccagGTTCGAGCATCGGAATATAATAATGTAAGGAGCCAGCTTAGTGCGATCAAC
ggtcaataacttttatgttttagttcacaactcctaaaaacgctctcttccccagGTTCGAGCATCGGAATATAATAATGTAAGGAGCCAGCTTAGTGCGATCAACAGGAAGCAAAGTGGGAG
tcctaaa putative branch site (score: 2)
cgctctcttcccc putative PPT
ataacttttatgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttggcctcaattttatggctcgtttttgctatactaatacatctggtcaataacttttatgttttagttcacaactcctaaaaacgctctcttccccagGTTCGAGCATCGGAATATAATAATGTAAGGAGCCAGCTTAGTGCGATCAACAGGAAGCAAAGTGGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG