1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ttgccatttcatctagctagggactcgaatacatggcaattatatattcaaaacgtggtttcttccatctagtgcatgatccttgtcaaccttcctgtagGATATCATTATGTATGTGAATTCGCCAGGAGGGTCAGTGACAGCTG
species | Zea mays |
transcript | GRMZM2G121456_T03 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ACATCATTGTAGCACAACTGCTCTACCTCGACGCTATTGATCCCAATAAG GATATCATTATGTATGTGAATTCGCCAGGAGGGTCAGTGACAGCTGEST: gi|211481382|gb|FL023994.1|FL023994
genomic: ACATCATTGTAGCACAACTGCTCTACCTCGACGCTATTGATCCCAATAAGgtgaaaacga ... cttcctgtagGATATCATTATGTATGTGAATTCGCCAGGAGGGTCAGTGACAGCTG
EST: ACATCATTGTAGCACAACTGCTCTACCTCGACGCTATTGATCCCAATAAG GATATCATTATGTATGTGAATTCGCCAGGAGGGTCAGTGACAGCTGGAATGEST: gi|74237088|gb|DT645002.1|DT645002
genomic: ACATCATTGTAGCACAACTGCTCTACCTCGACGCTATTGATCCCAATAAGgtgaaaacga ... cttcctgtagGATATCATTATGTATGTGAATTCGCCAGGAGGGTCAGTGACAGCTGGAATG
EST: ACATCATTGTAGCACAACTGCTCTACCTCGACGCTATTGATCCCAATAAG GATATCATTATGTATGTGAATTCGCCAGGAGGGTCAGTGACAGCTGEST: gi|78092088|gb|DV520462.1|DV520462
genomic: ACATCATTGTAGCACAACTGCTCTACCTCGACGCTATTGATCCCAATAAGgtgaaaacga ... cttcctgtagGATATCATTATGTATGTGAATTCGCCAGGAGGGTCAGTGACAGCTG
EST: ACATCATTGTAGCACAACTGCTCTACCTCGACGCTATTGATCCCAATAAG GATATCATTATGTATGTGAATTCGCCAGGAGGGTCAGTGACAGCTGEST: gi|211481381|gb|FL023993.1|FL023993
genomic: ACATCATTGTAGCACAACTGCTCTACCTCGACGCTATTGATCCCAATAAGgtgaaaacga ... cttcctgtagGATATCATTATGTATGTGAATTCGCCAGGAGGGTCAGTGACAGCTG
EST: CATCATTGTAGCACAGCTGCTCTACCTCGACGCTATTGATCCCCAATAAG GATATCATTATGTEST: gi|19821991|gb|BQ048015.1|BQ048015
genomic: CATCATTGTAGCACAACTGCTCTACCTCGACGCTATTGATCCC-AATAAGgtgaaaacga ... cttcctgtagGATATCATTATGT
EST: ACATCATTGTAGCACAGCTGCTCTACCTCGACGCTATTGATCCCAATAAG GATATCATTATGTATGTGAATTCGCCAGGAGGGTCAGTGACAGCTGEST: gi|71436538|gb|DR817588.1|DR817588
genomic: ACATCATTGTAGCACAACTGCTCTACCTCGACGCTATTGATCCCAATAAGgtgaaaacga ... cttcctgtagGATATCATTATGTATGTGAATTCGCCAGGAGGGTCAGTGACAGCTG
EST: ACATCATTGTAGCACAACTGCTCTACCTCGACGCTATTGATCCCAATAAG GATATCATTATGTATGTGAATTCGCCAGGAGGGTCAGTGACAGCTGEST: gi|148939986|gb|EC884717.2|EC884717
genomic: ACATCATTGTAGCACAACTGCTCTACCTCGACGCTATTGATCCCAATAAGgtgaaaacga ... cttcctgtagGATATCATTATGTATGTGAATTCGCCAGGAGGGTCAGTGACAGCTG
EST: ACATCATTGTAGCACAACTGCTCTACCTCGACGCTATTGATCCCAATAAG GATATCATTATGTATGTGAATTCGCCAGGAGGGTCAGTGACAGCTGEST: gi|61119391|gb|DN560352.1|DN560352
genomic: ACATCATTGTAGCACAACTGCTCTACCTCGACGCTATTGATCCCAATAAGgtgaaaacga ... cttcctgtagGATATCATTATGTATGTGAATTCGCCAGGAGGGTCAGTGACAGCTG
EST: ACATCATTGTAGCACAGCTGCTCTACCTCGACGCTATTGATCCCAATAAG GATATCATTATGTATGTEST: gi|211478511|gb|FL023987.1|FL023987
genomic: ACATCATTGTAGCACAACTGCTCTACCTCGACGCTATTGATCCCAATAAGgtgaaaacga ... cttcctgtagGATATCATTATGTATGT
EST: ACATCATTGTAGCACAACTGCTCTACCTCGACGCTATTGATCCCAATAAG GATATCATTATGTATGTGAATTCGCCAGGAGGGTCAGTGACAGCTGEST: gi|32913968|gb|CF018780.1|CF018780
genomic: ACATCATTGTAGCACAACTGCTCTACCTCGACGCTATTGATCCCAATAAGgtgaaaacga ... cttcctgtagGATATCATTATGTATGTGAATTCGCCAGGAGGGTCAGTGACAGCTG
EST: ACATCATTGTAGCACAGCTGCTCTACCTCGACGCTATTGATCCCAATAAG GATATCATTATGTATGTGAATTCGCCAGGAGGGTCAGTGACAGCTGGAATEST: gi|26456147|gb|CA827730.1|CA827730
genomic: ACATCATTGTAGCACAACTGCTCTACCTCGACGCTATTGATCCCAATAAGgtgaaaacga ... cttcctgtagGATATCATTATGTATGTGAATTCGCCAGGAGGGTCAGTGACAGCTGGAAT
EST: CGACGCTATTGATCCCAATAAG GATATCATTATGTATGTGAATTCGCCAGGAGGGTCAGTGACAGCTGEST: gi|149088221|gb|EE177331.2|EE177331
genomic: CGACGCTATTGATCCCAATAAGgtgaaaacga ... cttcctgtagGATATCATTATGTATGTGAATTCGCCAGGAGGGTCAGTGACAGCTG
EST: ACATCATTGTAGCACAACTGCTCTACCTCGACGCTATTGATCCCAATAAG GATATCATTATGTATGTGAATTCGCCAGGAGGGTCAGTGACAGCTGEST: gi|101399114|gb|EB821430.1|EB821430
genomic: ACATCATTGTAGCACAACTGCTCTACCTCGACGCTATTGATCCCAATAAGgtgaaaacga ... cttcctgtagGATATCATTATGTATGTGAATTCGCCAGGAGGGTCAGTGACAGCTG
EST: ACATCATTGTAGCACAACTGCTCTACCTCGACGCTATTGATCCCAATAAG GATATCATTATGTATGTGAATTCGCCAGGAGGGTCAGTGACAGCTGEST: gi|78111070|gb|DV529467.1|DV529467
genomic: ACATCATTGTAGCACAACTGCTCTACCTCGACGCTATTGATCCCAATAAGgtgaaaacga ... cttcctgtagGATATCATTATGTATGTGAATTCGCCAGGAGGGTCAGTGACAGCTG
EST: ACATCATTGTAGCACAACTGCTCTACCTCGACGCTATTGATCCCAATAAG GATATCATTATGTATGTGAATTCGCCAGGAGGGTCAGTGACAGCTGEST: gi|78544613|gb|DV622111.1|DV622111
genomic: ACATCATTGTAGCACAACTGCTCTACCTCGACGCTATTGATCCCAATAAGgtgaaaacga ... cttcctgtagGATATCATTATGTATGTGAATTCGCCAGGAGGGTCAGTGACAGCTG
EST: ACATCATTGTAGCACAGCTGTTCTACCTGGACGCTATTGATCCCAATAAG GATATCATTATGTATGTGAATTCGCCAGGAGGGTCAGTGACAGCTGEST: gi|76919121|gb|DV167599.1|DV167599
genomic: ACATCATTGTAGCACAACTGCTCTACCTCGACGCTATTGATCCCAATAAGgtgaaaacga ... cttcctgtagGATATCATTATGTATGTGAATTCGCCAGGAGGGTCAGTGACAGCTG
EST: ACATCATTGTAGCACAACTGCTCTACCTCGACGCTATTGATCCCAATAAG GATATCATTATGTATGTGAATTCGCCAGGAGGGTCAGTGACAGCTGEST: gi|71427481|gb|DR808531.1|DR808531
genomic: ACATCATTGTAGCACAACTGCTCTACCTCGACGCTATTGATCCCAATAAGgtgaaaacga ... cttcctgtagGATATCATTATGTATGTGAATTCGCCAGGAGGGTCAGTGACAGCTG
EST: ACATCATTGTAGCACAACTGCTCTACCTCGACGCTATTGATCCCAATAAG GATATCATTATGTATGTGAATTCGCCAGGAGGGTCAGTGACAGCTGEST: gi|71445134|gb|DR826184.1|DR826184
genomic: ACATCATTGTAGCACAACTGCTCTACCTCGACGCTATTGATCCCAATAAGgtgaaaacga ... cttcctgtagGATATCATTATGTATGTGAATTCGCCAGGAGGGTCAGTGACAGCTG
EST: ACATCATTGTAGCACAACTGCTCTACCTCGACGCTATTGATCCCAATAAG GATATCATTATGTATGTGAATTCGCCAGGAGGGTCAGTGACAGCTGEST: gi|74245787|gb|DT653701.1|DT653701
genomic: ACATCATTGTAGCACAACTGCTCTACCTCGACGCTATTGATCCCAATAAGgtgaaaacga ... cttcctgtagGATATCATTATGTATGTGAATTCGCCAGGAGGGTCAGTGACAGCTG
EST: ACATCATTGTAGCACAACTGCTCTACCTCGACGCTATTGATCCCAATAAG GATATCATTATGTATGTGAATTCGCCAGGAGGGTCAGTGACAGCTGEST: gi|148939985|gb|EC884716.2|EC884716
genomic: ACATCATTGTAGCACAACTGCTCTACCTCGACGCTATTGATCCCAATAAGgtgaaaacga ... cttcctgtagGATATCATTATGTATGTGAATTCGCCAGGAGGGTCAGTGACAGCTG
EST: ACATCATTGTAGCACAACTGCTCTACCTCGACGCTATTGATCCCAATAAG GATATCATTATGTATGTGAATTCGCCAGGAGGGTCAGTGACAGCTGEST: gi|78090189|gb|DV518563.1|DV518563
genomic: ACATCATTGTAGCACAACTGCTCTACCTCGACGCTATTGATCCCAATAAGgtgaaaacga ... cttcctgtagGATATCATTATGTATGTGAATTCGCCAGGAGGGTCAGTGACAGCTG
EST: ACATCATTGTAGCACAACTGCTCTACCTCGACGCTATTGATCCCAATAAG GATATCATTATGTATGTGAATTCGCCAGGAGGGTCAGTGACAGCTGEST: gi|148938546|gb|EC882867.2|EC882867
genomic: ACATCATTGTAGCACAACTGCTCTACCTCGACGCTATTGATCCCAATAAGgtgaaaacga ... cttcctgtagGATATCATTATGTATGTGAATTCGCCAGGAGGGTCAGTGACAGCTG
EST: ACATCATTGTAGCACAACTGCTCTACCTCGACGCTATTGATCCCAATAAG GATATCATTATGTATGTGAATTCGCCAGGAGGGTCAGTGACAGCTGEST: gi|19822147|gb|BQ048171.1|BQ048171
genomic: ACATCATTGTAGCACAACTGCTCTACCTCGACGCTATTGATCCCAATAAGgtgaaaacga ... cttcctgtagGATATCATTATGTATGTGAATTCGCCAGGAGGGTCAGTGACAGCTG
EST: ACATCATTGTAGCACAGCTGCTCTACCTCGACGCTATTGATCCCAATAAG GATATCATTATGTATGTGAATTCGCCAGGAGGGTCAGTGACAGCTGEST: gi|50338176|gb|CO533302.1|CO533302
genomic: ACATCATTGTAGCACAACTGCTCTACCTCGACGCTATTGATCCCAATAAGgtgaaaacga ... cttcctgtagGATATCATTATGTATGTGAATTCGCCAGGAGGGTCAGTGACAGCTG
EST: ACATCATTGTAGCACAACTGCTCTACCTCGACGCTATTGATCCCAATAAG GATATCATTATGTATGTGAATTCGCCAGGAGGGTCAGTGACAGCTGEST: gi|58029811|gb|CX725238.1|CX725238
genomic: ACATCATTGTAGCACAACTGCTCTACCTCGACGCTATTGATCCCAATAAGgtgaaaacga ... cttcctgtagGATATCATTATGTATGTGAATTCGCCAGGAGGGTCAGTGACAGCTG
EST: ACATCATTGTAGCACAGCTGCTCTACCTCGACGCTATTGATCCCAATAAG GATATCATTATGTATGTGAATTCGCCAGGAGGGTCAGTGACAGCTGEST: gi|101400189|gb|EB821914.1|EB821914
genomic: ACATCATTGTAGCACAACTGCTCTACCTCGACGCTATTGATCCCAATAAGgtgaaaacga ... cttcctgtagGATATCATTATGTATGTGAATTCGCCAGGAGGGTCAGTGACAGCTG
EST: ACATCATTGTAGCACAACTGCTCTACCTCGACGCTATTGATCCCAATAAG GATATCATTATGTATGTGAATTCGCCAGGAGGGTCAGTGACAGCTGEST: gi|93282145|gb|EB674409.1|EB674409
genomic: ACATCATTGTAGCACAACTGCTCTACCTCGACGCTATTGATCCCAATAAGgtgaaaacga ... cttcctgtagGATATCATTATGTATGTGAATTCGCCAGGAGGGTCAGTGACAGCTG
EST: ACATCATTGTAGCACAACTGCTCTACCTCGACGCTATTGATCCCAATAAG GATATCATTATGTATGTGAATTCGCCAGGAGGGTCAGTGACAGCTGEST: gi|76012850|gb|DT940020.1|DT940020
genomic: ACATCATTGTAGCACAACTGCTCTACCTCGACGCTATTGATCCCAATAAGgtgaaaacga ... cttcctgtagGATATCATTATGTATGTGAATTCGCCAGGAGGGTCAGTGACAGCTG
EST: ACATCATTGTAGCACAACTGCTCTACCTCGACGCTATTGATCCCAATAAG GATATCATTATGTATGTGAATTCGCCAGGAGGGTCAGTGACAGCTGEST: gi|211478510|gb|FL023986.1|FL023986
genomic: ACATCATTGTAGCACAACTGCTCTACCTCGACGCTATTGATCCCAATAAGgtgaaaacga ... cttcctgtagGATATCATTATGTATGTGAATTCGCCAGGAGGGTCAGTGACAGCTG
EST: ACATCATTGTAGCACAACTGCTCTACCTCGACGCTATTGATCCCAATAAG GATATCATTATGTATGTGAATTCGCCAGGAGGGTCAGTGACAGCTGEST: gi|93282646|gb|EB674910.1|EB674910
genomic: ACATCATTGTAGCACAACTGCTCTACCTCGACGCTATTGATCCCAATAAGgtgaaaacga ... cttcctgtagGATATCATTATGTATGTGAATTCGCCAGGAGGGTCAGTGACAGCTG
EST: ACATCATTGTAGCACAACTGCTCTACCTCGACGCTATTGATCCCAATAAG GATATCATTATGTATGTGAATTCGCCAGGAGGGTCAGTGACAGCTGEST: gi|148934818|gb|EC878864.2|EC878864
genomic: ACATCATTGTAGCACAACTGCTCTACCTCGACGCTATTGATCCCAATAAGgtgaaaacga ... cttcctgtagGATATCATTATGTATGTGAATTCGCCAGGAGGGTCAGTGACAGCTG
EST: ACATCATTGTAGCACAACTGCTCTACCTCGACGCTATTGATCCCAATAAG GATATCATTATGTATGTGAATTCGCCAGGAGGGTCAGTGACAGCTGEST: gi|113702266|gb|EE679770.1|EE679770
genomic: ACATCATTGTAGCACAACTGCTCTACCTCGACGCTATTGATCCCAATAAGgtgaaaacga ... cttcctgtagGATATCATTATGTATGTGAATTCGCCAGGAGGGTCAGTGACAGCTG
EST: ACATCATTGTAGCACAGCTGCTCTACCTCGACGCTATTGATCCCAATAAG GATATCATTATGTATGTGAATTCGCCAGGAGGGTCAGTGACAGCTGEST: gi|101399344|gb|EB821545.1|EB821545
genomic: ACATCATTGTAGCACAACTGCTCTACCTCGACGCTATTGATCCCAATAAGgtgaaaacga ... cttcctgtagGATATCATTATGTATGTGAATTCGCCAGGAGGGTCAGTGACAGCTG
EST: ACATCATTGTAGCACAACTGCTCTACCTCGACGCTATTGATCCCAATAAG GATATCATTATGTATGTGAATTCGCCAGGAGGGTCAGTGACAGCTGEST: gi|71307773|gb|DR790105.1|DR790105
genomic: ACATCATTGTAGCACAACTGCTCTACCTCGACGCTATTGATCCCAATAAGgtgaaaacga ... cttcctgtagGATATCATTATGTATGTGAATTCGCCAGGAGGGTCAGTGACAGCTG
EST: ACATCATTGTAGCACAACTGCTCTACCTCGACGCTATTGATCCCAATAAG GATATCATTATGTATGTGAATTCGCCAGGAGGGTCAGTGACAGCTGEST: gi|211478514|gb|FL023990.1|FL023990
genomic: ACATCATTGTAGCACAACTGCTCTACCTCGACGCTATTGATCCCAATAAGgtgaaaacga ... cttcctgtagGATATCATTATGTATGTGAATTCGCCAGGAGGGTCAGTGACAGCTG
EST: ACATCATGGTAGCACAGCTGCTCTACCTCGACGCTATGGATCCCNATAAG GATATCATTATGTATGTGAATTCGCCAGGAGGGTCAGTGACAGCTGEST: gi|26455779|gb|CA827362.1|CA827362
genomic: ACATCATTGTAGCACAACTGCTCTACCTCGACGCTATTGATCCCAATAAGgtgaaaacga ... cttcctgtagGATATCATTATGTATGTGAATTCGCCAGGAGGGTCAGTGACAGCTG
EST: ACATCATTGTAGCACAGCTGCTCTACCTCGACGCTATTGATCCCAATAAG GATATCATTATGTATGTGAATTCGCCAGGAGGGTCAGTGACAGCTG
genomic: ACATCATTGTAGCACAACTGCTCTACCTCGACGCTATTGATCCCAATAAGgtgaaaacga ... cttcctgtagGATATCATTATGTATGTGAATTCGCCAGGAGGGTCAGTGACAGCTG
attcaaaacgtggtttcttccatctagtgcatgatccttgtcaaccttcctgtagGATATCATTATGTATGTGAATTCGCCAGGAGGGTCAGTGACAGCTG
ccttcctgt CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgccatttcatctagctagggactcgaatacatggcaattatatattcaaaacgtggtttcttccatctagtgcatgatccttgtcaaccttcctgtagGATATCATTATGTATGTGAATTCGCCAGGAGGGTCAGTGACAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG