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...ctttcctcaatcctaaaccttggagctgtaaaacgatgtgtttactttacagttcactctagtttgatttcttagttagattcaccatgttcgttttcagAATCACAAGAGCGATGGAAAAGCGGCTGATGTATTGAATGAGTCAAATCTGAAGAGAGAAATG
species | Zea mays |
transcript | GRMZM2G111510_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GATCATGACCGTGACAAGTTGCACAAATTGGTGGAG AATCACAAGAGCGATGGAAAAGCGGCTGATGTATTGAATGAGTCAAATCEST: gi|78088731|gb|DV517124.1|DV517124
genomic: GATCATGACCGTGACAAGTTGCACAAATTGGTGGAGgtaacagtct ... tcgttttcagAATCACAAGAGCGATGGAAAAGCGGCTGATGTATTGAATGAGTCAAATC
EST: GATCATGACCGTGACAAGTTGCACAAATTGGTGGAG AATCACAAGAGCGATGGAAAAGCGGCTGATGTATTGAATGAGTCAAATCTGEST: gi|33095039|gb|CF055033.1|CF055033
genomic: GATCATGACCGTGACAAGTTGCACAAATTGGTGGAGgtaacagtct ... tcgttttcagAATCACAAGAGCGATGGAAAAGCGGCTGATGTATTGAATGAGTCAAATCTG
EST: GATCATGACCGTGACAAGTTGCACAAATTGGAGGAG AATCACAAGAGCGATGGAAAAGCGGCTGATGTATTGAATGAGTCAAATCTGEST: gi|166425399|gb|EG126777.1|EG126777
genomic: GATCATGACCGTGACAAGTTGCACAAATTGGTGGAGgtaacagtct ... tcgttttcagAATCACAAGAGCGATGGAAAAGCGGCTGATGTATTGAATGAGTCAAATCTG
EST: AATTGGTGGAG AATCACAAGAGCGATGGAAAAGCGGCTGATGTATTGAATGAGTCAAATCTGEST: gi|71432126|gb|DR813176.1|DR813176
genomic: AATTGGTGGAGgtaacagtct ... tcgttttcagAATCACAAGAGCGATGGAAAAGCGGCTGATGTATTGAATGAGTCAAATCTG
EST: GATCATGACCGTGACAAGTTGCACAAATTGGTGGAG AATCACAAGAGCGATGGAAAAGCGGCTGATGTATTGAATGAGTCAAATCTGEST: gi|28984330|gb|BQ538995.2|BQ538995
genomic: GATCATGACCGTGACAAGTTGCACAAATTGGTGGAGgtaacagtct ... tcgttttcagAATCACAAGAGCGATGGAAAAGCGGCTGATGTATTGAATGAGTCAAATCTG
EST: GATCATGACCGTGACAAGTTGCACAAATTGGTGGAG AATCACAAGAGCGATGGAAAAGCGGCTGATGTATTGAATGAGTCAAATCTGEST: gi|32932991|gb|CF037803.1|CF037803
genomic: GATCATGACCGTGACAAGTTGCACAAATTGGTGGAGgtaacagtct ... tcgttttcagAATCACAAGAGCGATGGAAAAGCGGCTGATGTATTGAATGAGTCAAATCTG
EST: GATCATGACCGTGACAAGTTGCACAAATTGGAGGAG AATCACAAGAGCGATGGAAAAGCGGCTGATGTATTGAATGAGTCAAATCTG
genomic: GATCATGACCGTGACAAGTTGCACAAATTGGTGGAGgtaacagtct ... tcgttttcagAATCACAAGAGCGATGGAAAAGCGGCTGATGTATTGAATGAGTCAAATCTG
tttacagttcactctagtttgatttcttagttagattcaccatgttcgttttcagAATCACAAGAGCGATGGAAAAGCGGCTGATGTATTGAATGAGTCAAATCTGAAGAGAGAAATG
gtttgat putative branch site (score: 58)
ttcgttttc putative PPT
tttgattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctttcctcaatcctaaaccttggagctgtaaaacgatgtgtttactttacagttcactctagtttgatttcttagttagattcaccatgttcgttttcagAATCACAAGAGCGATGGAAAAGCGGCTGATGTATTGAATGAGTCAAATCTGAAGAGAGAAATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - -ggagctg
- - - - - - - - - - - - - - - - -cgatgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttcacca