1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tgaattggcaacggtttgtttagctgctcttcatgagctaaatctgtcaggacttaggtattttggcgggtgttaacaagttttccctctcattttgcagTGTGTCGTCCCTGATGACAACCACGGAATCCATAATTGTAGAGATTCCCAAGGAAGAGGCACCGGCTCCAGCAATGGGTGGCGGCATGGGTGGCATGGAT
species | Zea mays |
transcript | GRMZM2G111477_T02 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CTAAAGGTTATCAGAACTGCTTTGGTGGATGCTGCTAG TGTGTCGTCCCTGATGACAACCACGGAATCCATAATTGTAGAGATTCCCAAEST: gi|60397850|gb|DN230666.1|DN230666
genomic: CTAAAGGTTATCAGAACTGCTTTGGTGGATGCTGCTAGgtaaactgat ... cattttgcagTGTGTCGTCCCTGATGACAACCACGGAATCCATAATTGTAGAGATTCCCAA
EST: ATCATTGACCCGCTAAAGGTTATCAGAACTGCTTTGGTGGATGCTGCTAG TGTGTCGTCCCTGATGACAACCACGGAATCCATAATTGTAGAGATTCCCAAEST: gi|113616752|gb|DW782955.1|DW782955
genomic: ATCATTGACCCGCTAAAGGTTATCAGAACTGCTTTGGTGGATGCTGCTAGgtaaactgat ... cattttgcagTGTGTCGTCCCTGATGACAACCACGGAATCCATAATTGTAGAGATTCCCAA
EST: CTAAAGGTTATCAGAACTGCTTTGGTGGATGCTGACTAG TGTGTCGTCCCTGATGACAACCACGGAATCCATAATTGTAGAGATTCCCA
genomic: CTAAAGGTTATCAGAACTGCTTTGGTGGATGCTG-CTAGgtaaactgat ... cattttgcagTGTGTCGTCCCTGATGACAACCACGGAATCCATAATTGTAGAGATTCCCA
gtcaggacttaggtattttggcgggtgttaacaagttttccctctcattttgcagTGTGTCGTCCCTGATGACAACCACGGAATCCATAATTGTAGAGATTCCCAAGGAAGAGGCACCGGCTCCAGCAATGGGTGGCGGCATGGGTGGCATGGAT
tgttaac putative branch site (score: 263)
ttttccctctcatttt putative PPT
tatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgaattggcaacggtttgtttagctgctcttcatgagctaaatctgtcaggacttaggtattttggcgggtgttaacaagttttccctctcattttgcagTGTGTCGTCCCTGATGACAACCACGGAATCCATAATTGTAGAGATTCCCAAGGAAGAGGCACCGGCTCCAGCAATGGGTGGCGGCATGGGTGGCATGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
tgaattg
- - - - - - - - - - - gctgctc
- - - - - - - - - - - - - - - -catgagc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcgggtg