1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtttttttctcagcattcacatccttaaagtgtgtttttttgcttgttcagttctaattttttatttgttccttcagCTTGCCTTTTATTACAGCTACTGCGGATGGCCCCAAGCATATTGAGACTACTCTTACCAGGGCTAAATTTGAAGAGCTATGCTCAGATCTCCTTGACAG
species | Zea mays |
transcript | GRMZM2G111475_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GCTGAGAAGGCAAAGATGGAGCTGTCATCTTTGACCCAAACAAACATAAG CTTGCCTTTTATTACAGCTACTGCGGATGGCCCCAAGCATATTGAGACTACEST: gi|26558488|gb|CA830723.1|CA830723
genomic: GCTGAGAAGGCAAAGATGGAGCTGTCATCTTTGACCCAAACAAACATAAGgtttttttct ... gttccttcagCTTGCCTTTTATTACAGCTACTGCGGATGGCCCCAAGCATATTGAGACTAC
EST: GCTGAGAAGGCAAAGATGGAGCTGTCATCTTTGACCCAAACAAACATAAG CTTGCCTTTTATTACAGCTACTGCGGATGGCCCCAAGCATATTGAGACTACEST: gi|22133613|gb|BQ833805.1|BQ833805
genomic: GCTGAGAAGGCAAAGATGGAGCTGTCATCTTTGACCCAAACAAACATAAGgtttttttct ... gttccttcagCTTGCCTTTTATTACAGCTACTGCGGATGGCCCCAAGCATATTGAGACTAC
EST: GCTGAGAAGGCAAAGATGGAGCTGTCATCTTTGACCCAAACAAACATAAG CTTGCCTTTTATTACAGCTACTGCGGATGGCCCCAAGCATATTGAGACTAC
genomic: GCTGAGAAGGCAAAGATGGAGCTGTCATCTTTGACCCAAACAAACATAAGgtttttttct ... gttccttcagCTTGCCTTTTATTACAGCTACTGCGGATGGCCCCAAGCATATTGAGACTAC
ccttaaagtgtgtttttttgcttgttcagttctaattttttatttgttccttcagCTTGCCTTTTATTACAGCTACTGCGGATGGCCCCAAGCATATTGAGACTACTCTTACCAGGGCTAAATTTGAAGAGCTATGCTCAGATCTCCTTGACAG
ttctaat putative branch site (score: 67)
ttttttatttgttcct CT-rich tract
ttcagttctaattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttttttctcagcattcacatccttaaagtgtgtttttttgcttgttcagttctaattttttatttgttccttcagCTTGCCTTTTATTACAGCTACTGCGGATGGCCCCAAGCATATTGAGACTACTCTTACCAGGGCTAAATTTGAAGAGCTATGCTCAGATCTCCTTGACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT