1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaataaacagcccagccttggattcattctcattattctcctctcttctccgacgaccatgacgacctccatggtccgtccatgcagGGATCGTGCGGAACCGGCCGGTGCCGATCCCGGGGAACGGGATGCAGCTGACCAACGTGGCGCACGTCCGGGACCTGTCCAGCATGCTGTCGCTGGCCGT
species | Zea mays |
transcript | GRMZM2G111216_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CATGATCGGCTCCGGCAACAACAAGGACTGCGAGGAGTGGTTCTTCGACA GGATCGTGCGGAACCGGCCGGTGCCGATCCCGGGGAACGGGATGCAGCTGAEST: gi|149082554|gb|EE171749.2|EE171749
genomic: CATGATCGGCTCCGGCAACAACAAGGACTGCGAGGAGTGGTTCTTCGACAgtaataaaca ... gtccatgcagGGATCGTGCGGAACCGGCCGGTGCCGATCCCGGGGAACGGGATGCAGCTGA
EST: CATGATCGGCTCCGGCAACAACAAGGACTGCGAGGAGTGGTTCTTCGACA GGATCGTGCGGAACCGGCCGGTGCCGATCCCGGGGAACGGGATGCAGCTGAEST: gi|71763125|gb|DR961062.1|DR961062
genomic: CATGATCGGCTCCGGCAACAACAAGGACTGCGAGGAGTGGTTCTTCGACAgtaataaaca ... gtccatgcagGGATCGTGCGGAACCGGCCGGTGCCGATCCCGGGGAACGGGATGCAGCTGA
EST: CATGATCGGCTCCGGCAACAACAAGGACTGCGAGGAGTGGTTCTTCGACA GGATCGTGCGGAACCGGCCGGTGCCGATCCCGGGGAACGGGATGCAGCTGAEST: gi|149094578|gb|EE180104.2|EE180104
genomic: CATGATCGGCTCCGGCAACAACAAGGACTGCGAGGAGTGGTTCTTCGACAgtaataaaca ... gtccatgcagGGATCGTGCGGAACCGGCCGGTGCCGATCCCGGGGAACGGGATGCAGCTGA
EST: CATGATCGGCTCCGGCAACAACAAGGACTGCGAGGAGTGGTTCTTCGACA GGATCGTGCGGAACCGGCCGGTGCCGATCCCGGGGAACGGGATGCAGCTGAEST: gi|71448832|gb|DR829882.1|DR829882
genomic: CATGATCGGCTCCGGCAACAACAAGGACTGCGAGGAGTGGTTCTTCGACAgtaataaaca ... gtccatgcagGGATCGTGCGGAACCGGCCGGTGCCGATCCCGGGGAACGGGATGCAGCTGA
EST: CATGATCGGCTCCGGCAACAACAAGGACTGCGAGGAGTGGTTCTTCGACA GGATCGTGCGGAACCGGCCGGTGCCGATCCCGGGGAACGGGATGCAGCTGAEST: gi|37416734|gb|CF646020.1|CF646020
genomic: CATGATCGGCTCCGGCAACAACAAGGACTGCGAGGAGTGGTTCTTCGACAgtaataaaca ... gtccatgcagGGATCGTGCGGAACCGGCCGGTGCCGATCCCGGGGAACGGGATGCAGCTGA
EST: CATGATCGGCTCCGGCAACAACAAGGACTGCGAGGAGTGGTTCTTCGACA GGATCGTGCGGAACCGGCCGGTGCCGATCCCGGGGAACGGGATGCAGCTGA
genomic: CATGATCGGCTCCGGCAACAACAAGGACTGCGAGGAGTGGTTCTTCGACAgtaataaaca ... gtccatgcagGGATCGTGCGGAACCGGCCGGTGCCGATCCCGGGGAACGGGATGCAGCTGA
ttattctcctctcttctccgacgaccatgacgacctccatggtccgtccatgcagGGATCGTGCGGAACCGGCCGGTGCCGATCCCGGGGAACGGGATGCAGCTGACCAACGTGGCGCACGTCCGGGACCTGTCCAGCATGCTGTCGCTGGCCGT
tccgtcc CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaataaacagcccagccttggattcattctcattattctcctctcttctccgacgaccatgacgacctccatggtccgtccatgcagGGATCGTGCGGAACCGGCCGGTGCCGATCCCGGGGAACGGGATGCAGCTGACCAACGTGGCGCACGTCCGGGACCTGTCCAGCATGCTGTCGCTGGCCGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG