1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtatgacatgcctttgccattttatttccatcgcatgtcacctagaaactacacttttcttatgcctctttttgaatcctgcagTTTGTGGTTGGATTGGGAGATAAGGTCTCTCCAACTGATATCGAGGAAGGGATGAGGGTTGG
species | Zea mays |
transcript | GRMZM2G110185_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CTAATACGGATGATGCCAAATATGTTATAAATGTAAAACAAATTGCAAAG TTTGTGGTTGGATTGGGAGATAAGGTCTCTCCAACTGATATCGAGGAAGGGEST: gi|211399668|gb|FL004442.1|FL004442
genomic: CTAATACGGATGATGCCAAATATGTTATAAATGTAAAACAAATTGCAAAGgtatgacatg ... aatcctgcagTTTGTGGTTGGATTGGGAGATAAGGTCTCTCCAACTGATATCGAGGAAGGG
EST: CTAATACGGATGATGCCAAATATGTTATAAATGTAAAACAAATTGCAAAG TTTGTGGTCGGATTGGGAGATAAGGTCTCTCCAACTGATATCGAGGAAGGGEST: gi|149015481|gb|EE045355.2|EE045355
genomic: CTAATACGGATGATGCCAAATATGTTATAAATGTAAAACAAATTGCAAAGgtatgacatg ... aatcctgcagTTTGTGGTTGGATTGGGAGATAAGGTCTCTCCAACTGATATCGAGGAAGGG
EST: CTAATACGGATGATGCCAAATATGTTATAAATGTAAAACAAATTGCAAAG TTTGTGGTTGGATTGGGAGATAAGGTCTCTCCAACTGATATCGAGGAAGGGEST: gi|101395193|gb|EB819526.1|EB819526
genomic: CTAATACGGATGATGCCAAATATGTTATAAATGTAAAACAAATTGCAAAGgtatgacatg ... aatcctgcagTTTGTGGTTGGATTGGGAGATAAGGTCTCTCCAACTGATATCGAGGAAGGG
EST: CTAATACGGATGATGCCAAATATGTTATAAATGTAAAACAAATTGCAAAG TTTGTGGTTGGATTGGGAGATAAGGTCTCTCCAACTGATATCGAGGAAGGGEST: gi|211283517|gb|FL004412.1|FL004412
genomic: CTAATACGGATGATGCCAAATATGTTATAAATGTAAAACAAATTGCAAAGgtatgacatg ... aatcctgcagTTTGTGGTTGGATTGGGAGATAAGGTCTCTCCAACTGATATCGAGGAAGGG
EST: CTAATACGGATGATGCCAAATATGTTATAAATGTAAAACAAATTGCAAAG TTTGTGGTTGGATTGGGAGATAAGGTCTCTCCAACTGATATCGAGGAAGGGEST: gi|149087114|gb|EE176653.2|EE176653
genomic: CTAATACGGATGATGCCAAATATGTTATAAATGTAAAACAAATTGCAAAGgtatgacatg ... aatcctgcagTTTGTGGTTGGATTGGGAGATAAGGTCTCTCCAACTGATATCGAGGAAGGG
EST: CTAATACGGATGATGCCAAATATGTTATAAATGTAAAACAAATTGCAAAG TTTGTGGTTGGATTGGGAGATAAGGTCTCTCCAACTGATATCGAGGAAGGGEST: gi|211285334|gb|FL004433.1|FL004433
genomic: CTAATACGGATGATGCCAAATATGTTATAAATGTAAAACAAATTGCAAAGgtatgacatg ... aatcctgcagTTTGTGGTTGGATTGGGAGATAAGGTCTCTCCAACTGATATCGAGGAAGGG
EST: CTAATACGGATGATGCCAAATATGTTATAAATGTAAAACAAATTGCAAAG TTTGTGGTCGGATTGGGAGATAAGGTCTCTCCAACTGATATCGAGGAAGGGEST: gi|211399660|gb|FL004434.1|FL004434
genomic: CTAATACGGATGATGCCAAATATGTTATAAATGTAAAACAAATTGCAAAGgtatgacatg ... aatcctgcagTTTGTGGTTGGATTGGGAGATAAGGTCTCTCCAACTGATATCGAGGAAGGG
EST: CTAATACGGATGATGCCAAATATGTTATAAATGTAAAACAAATTGCAA-G TTTGTRGWCGGATTCGGAGATAAGGTCTCTCCAACTGATATCGAGGEST: gi|30087195|gb|CB885403.1|CB885403
genomic: CTAATACGGATGATGCCAAATATGTTATAAATGTAAAACAAATTGCAAAGgtatgacatg ... aatcctgcagTTTGTGGTTGGATTGGGAGATAAGGTCTCTCCAACTGATATCGAGG
EST: CTAATACGGATGATGCCAAATATGTTATAAATGTAAAACAAATTGCAAAG TTTGTGGTTGGATTGGGAGATAAGGTCTCTCCAACTGATATCGAGGAAGGGEST: gi|19437016|gb|BM953426.1|BM953426
genomic: CTAATACGGATGATGCCAAATATGTTATAAATGTAAAACAAATTGCAAAGgtatgacatg ... aatcctgcagTTTGTGGTTGGATTGGGAGATAAGGTCTCTCCAACTGATATCGAGGAAGGG
EST: CTAATACGGATGATGCCAAATATGTTATAAATGTAAAACAAATTGCAAAG TTTGTGGTCGGATTGGGAGATAAGGTCTCTCCAACTGATATCGAGGAAGGGEST: gi|211283515|gb|FL004410.1|FL004410
genomic: CTAATACGGATGATGCCAAATATGTTATAAATGTAAAACAAATTGCAAAGgtatgacatg ... aatcctgcagTTTGTGGTTGGATTGGGAGATAAGGTCTCTCCAACTGATATCGAGGAAGGG
EST: CTAATACGGATGATGCCAAATATGTTATAAATGTAAAACAAATTGCAAAG TTTGTGGTCGGATTGGGAGATAAGGTCTCTCCAACTGATATCGAGGAAGGGEST: gi|211283510|gb|FL004405.1|FL004405
genomic: CTAATACGGATGATGCCAAATATGTTATAAATGTAAAACAAATTGCAAAGgtatgacatg ... aatcctgcagTTTGTGGTTGGATTGGGAGATAAGGTCTCTCCAACTGATATCGAGGAAGGG
EST: CTAATACGGATGATGCCAAATATGTTATAAATGTAAAACAAATTGCAAAG TTTGTGGTCGGATTGGGAGATAAGGTCTCTCCAACTGATATCGAGGAAGGGEST: gi|67028224|gb|CO456973.1|CO456973
genomic: CTAATACGGATGATGCCAAATATGTTATAAATGTAAAACAAATTGCAAAGgtatgacatg ... aatcctgcagTTTGTGGTTGGATTGGGAGATAAGGTCTCTCCAACTGATATCGAGGAAGGG
EST: CTAATACGGATGATGCCAAATATGTTATAAATGTAAAACAAATTGCAAAG TTTGTGGTCGGATTGGGAGATAAGGTCTCTCCAACTGATATCGAGGAAGGGEST: gi|78085799|gb|DV514192.1|DV514192
genomic: CTAATACGGATGATGCCAAATATGTTATAAATGTAAAACAAATTGCAAAGgtatgacatg ... aatcctgcagTTTGTGGTTGGATTGGGAGATAAGGTCTCTCCAACTGATATCGAGGAAGGG
EST: CTAATACGGATGATGCCAAATATGTTATAAATGTAAAACAAATTGCAAAG TTTGTGGTTGGATTGGGAGATAAGGTCTCTCCAACTGATATCGAGGAAGGGEST: gi|19436438|gb|BM952848.1|BM952848
genomic: CTAATACGGATGATGCCAAATATGTTATAAATGTAAAACAAATTGCAAAGgtatgacatg ... aatcctgcagTTTGTGGTTGGATTGGGAGATAAGGTCTCTCCAACTGATATCGAGGAAGGG
EST: CTAATACGGATGATGCCAAATATGTTATAAATGTAAAACAAATTGCAAAG TTTGTGGTCGGATTGGGAGATAAGGTCTCTCCAACTGATATCGAGGAAGGGEST: gi|211285332|gb|FL004431.1|FL004431
genomic: CTAATACGGATGATGCCAAATATGTTATAAATGTAAAACAAATTGCAAAGgtatgacatg ... aatcctgcagTTTGTGGTTGGATTGGGAGATAAGGTCTCTCCAACTGATATCGAGGAAGGG
EST: CTAATACGGATGATGCCAAATATGTTATAAATGTAAAACAAATTGCAAAG TTTGTGGTCGGATTGGGAGATAAGGTCTCTCCAACTGATATCGAGGAAGGGEST: gi|211010592|gb|FL355819.1|FL355819
genomic: CTAATACGGATGATGCCAAATATGTTATAAATGTAAAACAAATTGCAAAGgtatgacatg ... aatcctgcagTTTGTGGTTGGATTGGGAGATAAGGTCTCTCCAACTGATATCGAGGAAGGG
EST: TAATACGGATGATGCCAAATATGTTATAAAATGTAAAACAAATTGCAAAG TTTGTGGTTGGATTTGGGAGATAAGGTCTCTCCAEST: gi|28930845|gb|CB334206.1|CB334206
genomic: TAATACGGATGATGCCAAATATGTTATAAA-TGTAAAACAAATTGCAAAGgtatgacatg ... aatcctgcagTTTGTGGTTGGATT-GGGAGATAAGGTCTCTCCA
EST: CTAATACGGATGATGCCAAATATGTTATAAATGTAAAACAAATTGCAAAG TTTGTGGTTGGATTGGGAGATAAGGTCTCTCCAACTGATATCGAGGAAGGGEST: gi|211283518|gb|FL004413.1|FL004413
genomic: CTAATACGGATGATGCCAAATATGTTATAAATGTAAAACAAATTGCAAAGgtatgacatg ... aatcctgcagTTTGTGGTTGGATTGGGAGATAAGGTCTCTCCAACTGATATCGAGGAAGGG
EST: CTAATACGGATGATGCCAAATATGTTATAAATGTAAA-CAAATTGCAAAG TTTGTGGTCGGATTGGGAGATAA
genomic: CTAATACGGATGATGCCAAATATGTTATAAATGTAAAACAAATTGCAAAGgtatgacatg ... aatcctgcagTTTGTGGTTGGATTGGGAGATAA
atcgcatgtcacctagaaactacacttttcttatgcctctttttgaatcctgcagTTTGTGGTTGGATTGGGAGATAAGGTCTCTCCAACTGATATCGAGGAAGGGATGAGGGTTGG
ttttcttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgacatgcctttgccattttatttccatcgcatgtcacctagaaactacacttttcttatgcctctttttgaatcctgcagTTTGTGGTTGGATTGGGAGATAAGGTCTCTCCAACTGATATCGAGGAAGGGATGAGGGTTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT