1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaaaccaagctcgcacccagcgctctatccatcgcttctgcatttcatccatagcaccaggtagctgagtagtttcggcaaccagGCACCGCCGGCGTGTGGCGCATCTCCGCGGTGAACGAGGCTGGGGGGTGGAAGGACCGGACCACGGTGGAGGACATGGATCTGGCCATCCGGGCCAGCCT
species | Zea mays |
transcript | GRMZM2G105631_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CGTGGAGCAGGAAGTGAGCTCCTCCGTCTGCGCCTTCTTTGGATTCAACG GCACCGCCGGCGTGTGGCGCATCTCCGCGGTGAACGAGGCTGGGGGGTGGAEST: gi|37416499|gb|CF645899.1|CF645899
genomic: CGTGGAGCAGGAAGTGAGCTCCTCCGTCTGCGCCTTCTTTGGATTCAACGgtaaaccaag ... cggcaaccagGCACCGCCGGCGTGTGGCGCATCTCCGCGGTGAACGAGGCTGGGGGGTGGA
EST: CGTGGAGCAGGAAGTGAGCTCCTCCGTCTGCGCCTTCTTTGGATTCAACG GCACCGCCGGCGTGTGGCGCATCTCCGCGGTGAACGAGGCTGGGGGGTGGAEST: gi|33467925|gb|CF244974.1|CF244974
genomic: CGTGGAGCAGGAAGTGAGCTCCTCCGTCTGCGCCTTCTTTGGATTCAACGgtaaaccaag ... cggcaaccagGCACCGCCGGCGTGTGGCGCATCTCCGCGGTGAACGAGGCTGGGGGGTGGA
EST: CGTGGAGCAGGAAGTGAGCTCCTCCGTCTGCGCCTTCTTTGGATTCAACG GCACCGCCGGCGTGTGGCGCATCTCCGCGGTGAACGAGGCTGGGGGGTGGAEST: gi|37418362|gb|CF646849.1|CF646849
genomic: CGTGGAGCAGGAAGTGAGCTCCTCCGTCTGCGCCTTCTTTGGATTCAACGgtaaaccaag ... cggcaaccagGCACCGCCGGCGTGTGGCGCATCTCCGCGGTGAACGAGGCTGGGGGGTGGA
EST: GTGAGCTCCTCCGTCTGCGCCTTCTTTGGATTCAACG GCACCGCCGGCGTGTGGCGCATCTCCGCGGTGAACGAGGCTGGGGGGTGGAEST: gi|211023212|gb|FK976630.1|FK976630
genomic: GTGAGCTCCTCCGTCTGCGCCTTCTTTGGATTCAACGgtaaaccaag ... cggcaaccagGCACCGCCGGCGTGTGGCGCATCTCCGCGGTGAACGAGGCTGGGGGGTGGA
EST: CGTGGAGCAGGAAGTGAGCTCCTCCGTCTGCGCC-TCCTT-GATTCAACG GCACCGCCGGCGTGTGGCGCATCTCCGCGGTGAACGAGGCTGGGGGGTGGAEST: gi|211023210|gb|FK976628.1|FK976628
genomic: CGTGGAGCAGGAAGTGAGCTCCTCCGTCTGCGCCTTCTTTGGATTCAACGgtaaaccaag ... cggcaaccagGCACCGCCGGCGTGTGGCGCATCTCCGCGGTGAACGAGGCTGGGGGGTGGA
EST: CGTGGAGCAGGAAGTGAGCTCCTCCGTCTGCNCCTTCTTTGGATTCAACG GCACCGC-GRCGTGTGGCGCATCTCCGCGGTGAACGAGGCTGGGGGGTGGAEST: gi|71330488|gb|DR802010.1|DR802010
genomic: CGTGGAGCAGGAAGTGAGCTCCTCCGTCTGCGCCTTCTTTGGATTCAACGgtaaaccaag ... cggcaaccagGCACCGCCGGCGTGTGGCGCATCTCCGCGGTGAACGAGGCTGGGGGGTGGA
EST: CGTGGAGCAGGAAGTGAGCTCCTCCGTCTGCGCCTTCTTTGGATTCAACG GCACCGCCGGCGTGTGGCGCATCTCCGCGGTGAACGAGGCTGGGGGGTGGAEST: gi|76018154|gb|DT945324.1|DT945324
genomic: CGTGGAGCAGGAAGTGAGCTCCTCCGTCTGCGCCTTCTTTGGATTCAACGgtaaaccaag ... cggcaaccagGCACCGCCGGCGTGTGGCGCATCTCCGCGGTGAACGAGGCTGGGGGGTGGA
EST: CGTGGAGCAGGAAGTGAGCTCCTCCGTCTGCGCCTTCTTTGGATTCAACG GCACCGCCGGCGTGTGGCGCATCTCCGCGGTGAACGAGGCTGGGGGGTGGAEST: gi|76020765|gb|DT947935.1|DT947935
genomic: CGTGGAGCAGGAAGTGAGCTCCTCCGTCTGCGCCTTCTTTGGATTCAACGgtaaaccaag ... cggcaaccagGCACCGCCGGCGTGTGGCGCATCTCCGCGGTGAACGAGGCTGGGGGGTGGA
EST: CGTGGAGCAGGAAGTGAGCTCCTCCGTCTGCCCCTTCTTTGGATTCCACG GCACCGCCGGCGTGTGGCGCATCTCCGCGGTGAACGAGGCTGGGGGGTGGAEST: gi|88757584|gb|DY541725.1|DY541725
genomic: CGTGGAGCAGGAAGTGAGCTCCTCCGTCTGCGCCTTCTTTGGATTCAACGgtaaaccaag ... cggcaaccagGCACCGCCGGCGTGTGGCGCATCTCCGCGGTGAACGAGGCTGGGGGGTGGA
EST: CGTGGAGCAGGAAGTGAGCTCCTCCGTCTGCGCCTTCTTTGGATTCAACG GCACCGCCGGCGTGTGGCGCATCTCCGCGGTGAACGAGGCTGGGGGGTGGA
genomic: CGTGGAGCAGGAAGTGAGCTCCTCCGTCTGCGCCTTCTTTGGATTCAACGgtaaaccaag ... cggcaaccagGCACCGCCGGCGTGTGGCGCATCTCCGCGGTGAACGAGGCTGGGGGGTGGA
atcgcttctgcatttcatccatagcaccaggtagctgagtagtttcggcaaccagGCACCGCCGGCGTGTGGCGCATCTCCGCGGTGAACGAGGCTGGGGGGTGGAAGGACCGGACCACGGTGGAGGACATGGATCTGGCCATCCGGGCCAGCCT
atttcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaaccaagctcgcacccagcgctctatccatcgcttctgcatttcatccatagcaccaggtagctgagtagtttcggcaaccagGCACCGCCGGCGTGTGGCGCATCTCCGCGGTGAACGAGGCTGGGGGGTGGAAGGACCGGACCACGGTGGAGGACATGGATCTGGCCATCCGGGCCAGCCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA